QTL mapping reveals key factors related to the isoflavone contents and agronomic traits of soybean (Glycine max)
Soybean is a valuable source of edible protein and oil, as well as secondary metabolites that can be used in food products, cosmetics, and medicines. However, because soybean isoflavone content is a quantitati... (Source: BMC Plant Biology)
Source: BMC Plant Biology - October 26, 2023 Category: Biology Authors: Jung Min Kim, Ji Su Seo, Jeong Woo Lee, Jae Il Lyu, Jaihyunk Ryu, Seok Hyun Eom, Bo-Keun Ha and Soon-Jae Kwon Tags: Research Source Type: research
Identification of volatile organic compounds in purple and white soybean flowers by HS-SPME/GC-MS
In conclusion, the method we developed effectively identified VOCs in soybean flowers, thus enriching our understanding of the interactions between soybean flowers and their pollinators.PMID:37874644 | DOI:10.1080/14786419.2023.2272027 (Source: Natural Product Research)
Source: Natural Product Research - October 24, 2023 Category: Biochemistry Authors: Suelen Pereira Magalh ães Jaqueline Munise Guimar ães da Silva Jos é Perez da Graça Estela de Oliveira Nunes Guilherme Juli ão Zocolo Clara Beatriz Hoffmann-Campo Maria Luiza Zeraik Source Type: research
Identification of volatile organic compounds in purple and white soybean flowers by HS-SPME/GC-MS
In conclusion, the method we developed effectively identified VOCs in soybean flowers, thus enriching our understanding of the interactions between soybean flowers and their pollinators.PMID:37874644 | DOI:10.1080/14786419.2023.2272027 (Source: Natural Product Research)
Source: Natural Product Research - October 24, 2023 Category: Biochemistry Authors: Suelen Pereira Magalh ães Jaqueline Munise Guimar ães da Silva Jos é Perez da Graça Estela de Oliveira Nunes Guilherme Juli ão Zocolo Clara Beatriz Hoffmann-Campo Maria Luiza Zeraik Source Type: research
Comparative transcriptome analysis reveals key pathways and regulatory networks in early resistance of Glycine max to soybean mosaic virus
As a high-value oilseed crop, soybean [Glycine max (L.) Merr.] is limited by various biotic stresses during its growth and development. Soybean mosaic virus (SMV) is a devastating viral infection of soybean that primarily affects young leaves and causes significant production and economic losses; however, the synergistic molecular mechanisms underlying the soybean response to SMV are largely unknown. Therefore, we performed RNA sequencing on SMV-infected resistant and susceptible soybean lines to determine the molecular mechanism of resistance to SMV. When the clean reads were aligned to the G. max reference genome, a tota...
Source: Frontiers in Microbiology - October 19, 2023 Category: Microbiology Source Type: research
Disturbed electron transport beyond PSI changes metabolome and transcriptome in Zn-deficient soybean
In this study we investigated the consequences of Zn-limitation in hydroponically cultivated soybean (Glycine max L.) plants. Parameters of photosynthesis biophysics were determined by spatially and spectrally resolved Kautsky and OJIP fluorescence kinetics and oxygen production at two time points (V4 stage, after five weeks, and pod development stage, R5-R6, after 8-10 weeks). Lower NPQ at 730 nm and lower quantum yield of electron transport flux until PSI acceptors were observed, indicating an inhibition of the PSI acceptor side. Metalloproteomics showed that down-regulation of Cu/Zn-superoxide dismutase (CuZnSOD) and Zn...
Source: Biochimica et Biophysica Acta - October 18, 2023 Category: Biochemistry Authors: Elisa Andresen Filis Morina Syed Nadeem Hussain Bokhari Peter Kon ík Hendrik K üpper Source Type: research
Disturbed electron transport beyond PSI changes metabolome and transcriptome in Zn-deficient soybean
In this study we investigated the consequences of Zn-limitation in hydroponically cultivated soybean (Glycine max L.) plants. Parameters of photosynthesis biophysics were determined by spatially and spectrally resolved Kautsky and OJIP fluorescence kinetics and oxygen production at two time points (V4 stage, after five weeks, and pod development stage, R5-R6, after 8-10 weeks). Lower NPQ at 730 nm and lower quantum yield of electron transport flux until PSI acceptors were observed, indicating an inhibition of the PSI acceptor side. Metalloproteomics showed that down-regulation of Cu/Zn-superoxide dismutase (CuZnSOD) and Zn...
Source: Biochimica et Biophysica Acta - October 18, 2023 Category: Biochemistry Authors: Elisa Andresen Filis Morina Syed Nadeem Hussain Bokhari Peter Kon ík Hendrik K üpper Source Type: research
Integrated transcriptomic and metabolomic analyses reveal the toxic effects of dimethoate on green vegetable soya bean seedlings
This study aimed to analyze the effect of dimethoate on the growth of green vegetable soya bean seedlings at the metabolic and transcriptional levels. An integrated analysis of the transcriptome and metabolome was performed to determine the responses of green vegetable soya bean seedlings to different concentrations (D1 for low dose, D2 for high dose and C for control) of dimethoate. In omics analyses, 4156 differentially expressed genes (DEGs) and 1935 differentially abundant metabolites (DAMs) were identified in the D1/C comparison, and 11162 DEGs and 819 DAMs were identified in D2/C. Correlation analyses revealed dimeth...
Source: Gene - September 22, 2023 Category: Genetics & Stem Cells Authors: Yitong Li Yang Yu Linqing Zhang Yongfeng Li Meng Gou Source Type: research
The impact of GmTSA and GmALS on soybean salt tolerance: uncovering the molecular landscape of amino acid and secondary metabolism pathways
Theor Appl Genet. 2023 Sep 22;136(10):212. doi: 10.1007/s00122-023-04461-4.ABSTRACTGmTSA and GmALS were screened out for salt stress in soybean and explore the poteintial amino acid secondary metabolism pathways. Soybean (Glycine max L.) is an oil and protein crop of global importance, and salinity has significant effects on soybean growth. Here, a population of soybean chromosome segment substitution lines was screened to identify highly salt-tolerant lines. In total, 24 quantitative trait loci (QTLs) on seven chromosomes were associated with salt tolerance, and CSSL_R71 was selected for further analysis. Although numerou...
Source: TAG. Theoretical and Applied Genetics - September 22, 2023 Category: Genetics & Stem Cells Authors: Minghao Sun Siming Wei Jiarui Liu Luyao Wang Yu Zhang Limin Hu Jingxi Piao Zhao Liang Hongwei Jiang Dawei Xin Ying Zhao Qingshan Chen Christine H Foyer Chunyan Liu Zhaoming Qi Source Type: research
Integrated transcriptomic and metabolomic analyses reveal the toxic effects of dimethoate on green vegetable soya bean seedlings
This study aimed to analyze the effect of dimethoate on the growth of green vegetable soya bean seedlings at the metabolic and transcriptional levels. An integrated analysis of the transcriptome and metabolome was performed to determine the responses of green vegetable soya bean seedlings to different concentrations (D1 for low dose, D2 for high dose and C for control) of dimethoate. In omics analyses, 4156 differentially expressed genes (DEGs) and 1935 differentially abundant metabolites (DAMs) were identified in the D1/C comparison, and 11162 DEGs and 819 DAMs were identified in D2/C. Correlation analyses revealed dimeth...
Source: Gene - September 22, 2023 Category: Genetics & Stem Cells Authors: Yitong Li Yang Yu Linqing Zhang Yongfeng Li Meng Gou Source Type: research
The impact of GmTSA and GmALS on soybean salt tolerance: uncovering the molecular landscape of amino acid and secondary metabolism pathways
Theor Appl Genet. 2023 Sep 22;136(10):212. doi: 10.1007/s00122-023-04461-4.ABSTRACTGmTSA and GmALS were screened out for salt stress in soybean and explore the poteintial amino acid secondary metabolism pathways. Soybean (Glycine max L.) is an oil and protein crop of global importance, and salinity has significant effects on soybean growth. Here, a population of soybean chromosome segment substitution lines was screened to identify highly salt-tolerant lines. In total, 24 quantitative trait loci (QTLs) on seven chromosomes were associated with salt tolerance, and CSSL_R71 was selected for further analysis. Although numerou...
Source: TAG. Theoretical and Applied Genetics - September 22, 2023 Category: Genetics & Stem Cells Authors: Minghao Sun Siming Wei Jiarui Liu Luyao Wang Yu Zhang Limin Hu Jingxi Piao Zhao Liang Hongwei Jiang Dawei Xin Ying Zhao Qingshan Chen Christine H Foyer Chunyan Liu Zhaoming Qi Source Type: research
GSE242530 Identification of GLYMA.13G153200 binding sites in soybean mid-maturation stage embryos.
Contributors : Julie Pelletier ; Leonardo Jo ; Rie Uzawa ; Min Chen ; Robert B Golberg ; John J HaradaSeries Type : Genome binding/occupancy profiling by high throughput sequencingOrganism : Glycine maxTo dissect the gene regulatory networks operating during soybean embryo development, we identified the binding sites genome-wide for transcription factor GLYMA.13G153200 in mid-maturation stage embryos using ChIP-seq. (Source: GEO: Gene Expression Omnibus)
Source: GEO: Gene Expression Omnibus - September 16, 2023 Category: Genetics & Stem Cells Tags: Genome binding/occupancy profiling by high throughput sequencing Glycine max Source Type: research
GSE242529 Identification of GLYMA.13G153200 binding sites in soybean early maturation stage embryos.
Contributors : Julie Pelletier ; Leonardo Jo ; Rie Uzawa ; Min Chen ; Robert B Golberg ; John J HaradaSeries Type : Genome binding/occupancy profiling by high throughput sequencingOrganism : Glycine maxTo dissect the gene regulatory networks operating during soybean embryo development, we identified the binding sites genome-wide for transcription factor GLYMA.13G153200 in early maturation stage embryos using ChIP-seq. (Source: GEO: Gene Expression Omnibus)
Source: GEO: Gene Expression Omnibus - September 16, 2023 Category: Genetics & Stem Cells Tags: Genome binding/occupancy profiling by high throughput sequencing Glycine max Source Type: research
GSE242528 Identification of GLYMA.04G093300 and GLYMA.06G314400 binding sites in soybean cotyledon stage embryos.
Contributors : Julie Pelletier ; Leonardo Jo ; Rie Uzawa ; Min Chen ; Robert B Golberg ; John J HaradaSeries Type : Genome binding/occupancy profiling by high throughput sequencingOrganism : Glycine maxTo dissect the gene regulatory networks operating during soybean embryo development, we identified the binding sites genome-wide for transcription factor GLYMA.04G093300 and GLYMA.06G314400 in cotyledon stage embryos using ChIP-seq. (Source: GEO: Gene Expression Omnibus)
Source: GEO: Gene Expression Omnibus - September 16, 2023 Category: Genetics & Stem Cells Tags: Genome binding/occupancy profiling by high throughput sequencing Glycine max Source Type: research
Black soybean (Glycine max (L.) Merr.): paving the way toward new nutraceutical
(Source: Critical Reviews in Food Science and Nutrition)
Source: Critical Reviews in Food Science and Nutrition - September 15, 2023 Category: Nutrition Authors: Kumar, Manoj Suhag, Rajat Hasan, Muzaffar Dhumal, Sangram Radha Pandiselvam, R. Senapathy, Marisennayya Sampathrajan, Vellaikumar Punia, Sneh Sayed, Ali A. S. Singh, Surinder Kennedy, John F. Source Type: research
Genome-wide survey, molecular evolution and expression analysis of Auxin Response Factor (ARF) gene family indicating their key role in seed number per pod in pigeonpea (C. cajan L. Millsp.)
Int J Biol Macromol. 2023 Sep 12:126833. doi: 10.1016/j.ijbiomac.2023.126833. Online ahead of print.ABSTRACTAuxin Response Factors (ARF) are a family of transcription factors that mediate auxin signalling and regulate multiple biological processes. Their crucial role in increasing plant biomass/yield influenced this study, where a systematic analysis of ARF gene family was carried out to identify the key proteins controlling embryo/seed developmental pathways in Pigeonpea. A genome-wide scan revealed the presence of 12 ARF genes in pigeonpea, distributed across the chromosomes 1, 3, 4, 8 and 11. Domain analysis of ARF prot...
Source: International Journal of Biological Macromolecules - September 14, 2023 Category: Biochemistry Authors: Kumari Arpita Sandhya Sharma Harsha Srivastava Kuldeep Kumar Muntazir Mushtaq Palak Gupta Rishu Jain Kishor Gaikwad Source Type: research
