GSE220163 Effect of GmBIR1 kinase dead mutation on soybean root gene expression
Contributors : Tracy Hawk ; Tarek HeweziSeries Type : Expression profiling by high throughput sequencingOrganism : Glycine maxTo investigate the effect of overexpression of wild-type and kinase deactivated GmBIR1 on soybean transgenic hairy root gene expression (Source: GEO: Gene Expression Omnibus)
Source: GEO: Gene Expression Omnibus - May 31, 2023 Category: Genetics & Stem Cells Tags: Expression profiling by high throughput sequencing Glycine max Source Type: research
In silico analysis of angiotensin-converting enzyme inhibitory compounds obtained from soybean [Glycine max (L.) Merr.]
In this study, the molecular basis for selective inhibition of 34 soy phytomolecules (especially of beta-sitosterol, soyasaponin I, soyasaponin II, soyasaponin II methyl ester, dehydrosoyasaponin I, and phytic acid) was evaluated using in silico molecular docking approaches and dynamic simulations. Our results indicate that amongst the compounds, beta-sitosterol exhibited a potential inhibitory action against ACE I. (Source: Frontiers in Physiology)
Source: Frontiers in Physiology - May 31, 2023 Category: Physiology Source Type: research
Genes, Vol. 14, Pages 1188: Genome-Wide Characterization and Sequence Polymorphism Analyses of Glycine max Fibrillin (FBN) Revealed Its Role in Response to Drought Condition
In this study, 16 members of FBN were identified in Glycine max and characterized by using different bioinformatics tools. Phylogenetic analysis classified FBN genes into seven groups. The presence of stress-related cis-elements in the upstream region of GmFBN highlighted their role in tolerance against abiotic stresses. To further decipher the function, physiochemical properties, conserved motifs, chromosomal localization, subcellular localization, and cis-acting regulatory elements were also analyzed. Gene expression analysis based on FPKM values revealed that GmFBNs greatly enhanced soybean drought tolerance and control...
Source: Genes - May 29, 2023 Category: Genetics & Stem Cells Authors: Muhammad Zeshan Zafer Muhammad Hammad Nadeem Tahir Zulqurnain Khan Muhammad Sajjad Xiangkuo Gao Muhammad Amir Bakhtavar Ummara Waheed Maria Siddique Zhide Geng Shoaib Ur Rehman Tags: Article Source Type: research
RPA-CRISPR/Cas12a mediated isothermal amplification for visual detection of Phytophthora sojae
In conclusion, the RPA-CRISPR/Cas12a detection assay developed here is sensitive, efficient, and convenient, and has potential for further development as a kit for monitoring root rot of soybean in the field. (Source: Frontiers in cellular and infection microbiology)
Source: Frontiers in cellular and infection microbiology - May 26, 2023 Category: Microbiology Source Type: research
Genes, Vol. 14, Pages 1150: Genome-Wide Tissue-Specific Genes Identification for Novel Tissue-Specific Promoters Discovery in Soybean
In this study, based on the transcriptome data, a total of 288 tissue-specific genes were collected, expressed in seven tissues, including the leaves, stems, flowers, pods, seeds, roots, and nodules of soybean (Glycine max). KEGG pathway enrichment analysis was carried out, and 52 metabolites were annotated. A total of 12 tissue-specific genes were selected via the transcription expression level and validated through real-time quantitative PCR, of which 10 genes showed tissue-specific expression. The 3-kb 5′ upstream regions of ten genes were obtained as putative promoters. Further analysis showed that all th...
Source: Genes - May 25, 2023 Category: Genetics & Stem Cells Authors: Yu Zhang Guan Li Guo Qiu Tags: Communication Source Type: research
GmTNRP1, associated with rhizobial type ‐III effector NopT, regulates nitrogenase activity in the nodules of soybean (Glycine max)
This study enhanced the understanding of the mechanism underlying symbiotic association between soybean and rhizobia. (Source: Food and Energy Security)
Source: Food and Energy Security - May 24, 2023 Category: Food Science Authors: Chao Ma,
Chunyan Liu,
Yanyu Yu,
Shengnan Ma,
Siyang Pan,
Haojie Feng,
Qingshan Chen,
Dawei Xin,
Xiaoxia Wu,
Jinhui Wang Tags: ORIGINAL ARTICLE Source Type: research
Major genetic locus with pleiotropism determined seed-related traits in cultivated and wild soybeans
In this study, we used a high-density genetic map constructed by F10 RIL populations from a cross between Glycine max and Glycine soja to detect additive QTLs for seven seed-related traits over the last three years. As a result, we identified one novel pleiotropic QTL, qSS14, that simultaneously controlled four seed size traits (100-seed weight, seed length, seed width, and seed thickness) and two consistently detected QTLs, qSW17, and qSLW02, in multiple years of phenotypic data. Furthermore, we predicted two, two and three candidate genes within these three critical loci based on the parental resequencing data and gene f...
Source: TAG. Theoretical and Applied Genetics - May 10, 2023 Category: Genetics & Stem Cells Authors: Baoqi Yuan Guangxun Qi Cuiping Yuan Yumin Wang Hongkun Zhao Yuqiu Li Yingnan Wang Lingchao Dong Yingshan Dong Xiaodong Liu Source Type: research
Major genetic locus with pleiotropism determined seed-related traits in cultivated and wild soybeans
In this study, we used a high-density genetic map constructed by F10 RIL populations from a cross between Glycine max and Glycine soja to detect additive QTLs for seven seed-related traits over the last three years. As a result, we identified one novel pleiotropic QTL, qSS14, that simultaneously controlled four seed size traits (100-seed weight, seed length, seed width, and seed thickness) and two consistently detected QTLs, qSW17, and qSLW02, in multiple years of phenotypic data. Furthermore, we predicted two, two and three candidate genes within these three critical loci based on the parental resequencing data and gene f...
Source: TAG. Theoretical and Applied Genetics - May 10, 2023 Category: Genetics & Stem Cells Authors: Baoqi Yuan Guangxun Qi Cuiping Yuan Yumin Wang Hongkun Zhao Yuqiu Li Yingnan Wang Lingchao Dong Yingshan Dong Xiaodong Liu Source Type: research
Major genetic locus with pleiotropism determined seed-related traits in cultivated and wild soybeans
In this study, we used a high-density genetic map constructed by F10 RIL populations from a cross between Glycine max and Glycine soja to detect additive QTLs for seven seed-related traits over the last three years. As a result, we identified one novel pleiotropic QTL, qSS14, that simultaneously controlled four seed size traits (100-seed weight, seed length, seed width, and seed thickness) and two consistently detected QTLs, qSW17, and qSLW02, in multiple years of phenotypic data. Furthermore, we predicted two, two and three candidate genes within these three critical loci based on the parental resequencing data and gene f...
Source: TAG. Theoretical and Applied Genetics - May 10, 2023 Category: Genetics & Stem Cells Authors: Baoqi Yuan Guangxun Qi Cuiping Yuan Yumin Wang Hongkun Zhao Yuqiu Li Yingnan Wang Lingchao Dong Yingshan Dong Xiaodong Liu Source Type: research
Major genetic locus with pleiotropism determined seed-related traits in cultivated and wild soybeans
In this study, we used a high-density genetic map constructed by F10 RIL populations from a cross between Glycine max and Glycine soja to detect additive QTLs for seven seed-related traits over the last three years. As a result, we identified one novel pleiotropic QTL, qSS14, that simultaneously controlled four seed size traits (100-seed weight, seed length, seed width, and seed thickness) and two consistently detected QTLs, qSW17, and qSLW02, in multiple years of phenotypic data. Furthermore, we predicted two, two and three candidate genes within these three critical loci based on the parental resequencing data and gene f...
Source: TAG. Theoretical and Applied Genetics - May 10, 2023 Category: Genetics & Stem Cells Authors: Baoqi Yuan Guangxun Qi Cuiping Yuan Yumin Wang Hongkun Zhao Yuqiu Li Yingnan Wang Lingchao Dong Yingshan Dong Xiaodong Liu Source Type: research
Major genetic locus with pleiotropism determined seed-related traits in cultivated and wild soybeans
In this study, we used a high-density genetic map constructed by F10 RIL populations from a cross between Glycine max and Glycine soja to detect additive QTLs for seven seed-related traits over the last three years. As a result, we identified one novel pleiotropic QTL, qSS14, that simultaneously controlled four seed size traits (100-seed weight, seed length, seed width, and seed thickness) and two consistently detected QTLs, qSW17, and qSLW02, in multiple years of phenotypic data. Furthermore, we predicted two, two and three candidate genes within these three critical loci based on the parental resequencing data and gene f...
Source: TAG. Theoretical and Applied Genetics - May 10, 2023 Category: Genetics & Stem Cells Authors: Baoqi Yuan Guangxun Qi Cuiping Yuan Yumin Wang Hongkun Zhao Yuqiu Li Yingnan Wang Lingchao Dong Yingshan Dong Xiaodong Liu Source Type: research
Conserved H3K27me3-associated chromatin looping mediates physical interactions of gene clusters in plants
This article is protected by copyright. All rights reserved.PMID:37154484 | DOI:10.1111/jipb.13502 (Source: Journal of Integrative Plant Biology)
Source: Journal of Integrative Plant Biology - May 8, 2023 Category: Biology Authors: Linhua Sun Yuxin Cao Zhu Li Yi Liu Xiaochang Yin Xing Wang Deng Hang He Weiqiang Qian Source Type: research
LDRGDb - Legumes disease resistance genes database
Front Plant Sci. 2023 Apr 18;14:1143111. doi: 10.3389/fpls.2023.1143111. eCollection 2023.ABSTRACTLegumes comprise one of the world's largest, most diverse, and economically important plant families, known for their nutritional and medicinal benefits. Legumes are susceptible to a wide range of diseases, similar to other agricultural crops. Diseases have a considerable impact on the production of legume crop species, resulting in large yield losses worldwide. Due to continuous interactions between plants and their pathogens in the environment and the evolution of new pathogens under high selection pressure; disease resistan...
Source: Genomics Proteomics ... - May 5, 2023 Category: Genetics & Stem Cells Authors: Harshita Saxena Aishani Kulshreshtha Avinav Agarwal Anuj Kumar Nisha Singh Chakresh Kumar Jain Source Type: research
LDRGDb - Legumes disease resistance genes database
Front Plant Sci. 2023 Apr 18;14:1143111. doi: 10.3389/fpls.2023.1143111. eCollection 2023.ABSTRACTLegumes comprise one of the world's largest, most diverse, and economically important plant families, known for their nutritional and medicinal benefits. Legumes are susceptible to a wide range of diseases, similar to other agricultural crops. Diseases have a considerable impact on the production of legume crop species, resulting in large yield losses worldwide. Due to continuous interactions between plants and their pathogens in the environment and the evolution of new pathogens under high selection pressure; disease resistan...
Source: Genomics Proteomics ... - May 5, 2023 Category: Genetics & Stem Cells Authors: Harshita Saxena Aishani Kulshreshtha Avinav Agarwal Anuj Kumar Nisha Singh Chakresh Kumar Jain Source Type: research
GSE228888 RNA-seq Provides Insights into Regulatory Networks in Response to Sucrose Signaling in Soybean Roots
Contributors : Claudia Uhde-Stone ; Leela C Manozna NidumoluSeries Type : Expression profiling by high throughput sequencingOrganism : Glycine maxSoybean (Glycine max) is an important agricultural crop, but nutrient deficiencies frequently limit soybean production. While research has advanced our understanding of plant responses to long-term nutrient deficiencies, less is known about the signaling pathways and immediate responses to certain nutrient deficiencies, such as Pi and Fe deficiencies. Recent studies have shown that sucrose acts as a long-distance signal, sent from the shoot to the root in response to multiple nu...
Source: GEO: Gene Expression Omnibus - May 5, 2023 Category: Genetics & Stem Cells Tags: Expression profiling by high throughput sequencing Glycine max Source Type: research
