The utility of SARS-CoV-2 genomic data for informative clustering under different epidemiological scenarios and sampling
CONCLUSION: Differences in epidemiology and sampling can impact our ability to identify genomic clusters that describe the underlying population structure. These findings can help to guide recommendations for the use of pathogen clustering in public health investigations.PMID:37531976 | DOI:10.1016/j.meegid.2023.105484 (Source: Infection, Genetics and Evolution)
Source: Infection, Genetics and Evolution - August 2, 2023 Category: Genetics & Stem Cells Authors: Benjamin Sobkowiak Pouya Haghmaram Natalie Prystajecky James E A Zlosnik John Tyson Linda M N Hoang Caroline Colijn Source Type: research
The utility of SARS-CoV-2 genomic data for informative clustering under different epidemiological scenarios and sampling
CONCLUSION: Differences in epidemiology and sampling can impact our ability to identify genomic clusters that describe the underlying population structure. These findings can help to guide recommendations for the use of pathogen clustering in public health investigations.PMID:37531976 | DOI:10.1016/j.meegid.2023.105484 (Source: Infection, Genetics and Evolution)
Source: Infection, Genetics and Evolution - August 2, 2023 Category: Genetics & Stem Cells Authors: Benjamin Sobkowiak Pouya Haghmaram Natalie Prystajecky James E A Zlosnik John Tyson Linda M N Hoang Caroline Colijn Source Type: research
Molecular and genetic characterization of bovine parainfluenza type 3 European field and vaccine strains
In this study, we sequenced the full-genome and genetically characterized BPIV-3 strains isolated from animals displaying respiratory illness in France and Sweden, as well as the vaccine strains contained in three different commercialized vaccines. Our results show that the sequences from France and Sweden belong to genotype C. However, a third sequence from Sweden from 2017 clustered within genotype A. The sequencing of vaccine strains revealed that two of the vaccine strains clustered within genotype C, whereas the third vaccine strain belonged to genotype A. Altogether, our findings suggest that both genotypes A and C c...
Source: Infection, Genetics and Evolution - July 23, 2023 Category: Genetics & Stem Cells Authors: Maria Gaudino Jean-Fran çois Valarcher Sara H ägglund Katarina N äslund Siamak Zohari Mariette F Ducatez Gilles Meyer Source Type: research
Molecular and genetic characterization of bovine parainfluenza type 3 European field and vaccine strains
In this study, we sequenced the full-genome and genetically characterized BPIV-3 strains isolated from animals displaying respiratory illness in France and Sweden, as well as the vaccine strains contained in three different commercialized vaccines. Our results show that the sequences from France and Sweden belong to genotype C. However, a third sequence from Sweden from 2017 clustered within genotype A. The sequencing of vaccine strains revealed that two of the vaccine strains clustered within genotype C, whereas the third vaccine strain belonged to genotype A. Altogether, our findings suggest that both genotypes A and C c...
Source: Infection, Genetics and Evolution - July 23, 2023 Category: Genetics & Stem Cells Authors: Maria Gaudino Jean-Fran çois Valarcher Sara H ägglund Katarina N äslund Siamak Zohari Mariette F Ducatez Gilles Meyer Source Type: research
Molecular and genetic characterization of bovine parainfluenza type 3 European field and vaccine strains
In this study, we sequenced the full-genome and genetically characterized BPIV-3 strains isolated from animals displaying respiratory illness in France and Sweden, as well as the vaccine strains contained in three different commercialized vaccines. Our results show that the sequences from France and Sweden belong to genotype C. However, a third sequence from Sweden from 2017 clustered within genotype A. The sequencing of vaccine strains revealed that two of the vaccine strains clustered within genotype C, whereas the third vaccine strain belonged to genotype A. Altogether, our findings suggest that both genotypes A and C c...
Source: Infection, Genetics and Evolution - July 23, 2023 Category: Genetics & Stem Cells Authors: Maria Gaudino Jean-Fran çois Valarcher Sara H ägglund Katarina N äslund Siamak Zohari Mariette F Ducatez Gilles Meyer Source Type: research
