Evolutionary dynamics and adaptive analysis of Seneca Valley virus
In conclusion, our in-depth investigation into SVV's origin, dissemination, evolution, and adaptation emphasizes the significance of SVV surveillance and control measures.PMID:37558190 | DOI:10.1016/j.meegid.2023.105488 (Source: Infection, Genetics and Evolution)
Source: Infection, Genetics and Evolution - August 9, 2023 Category: Genetics & Stem Cells Authors: Weijun Zeng Quanhui Yan Pengfei Du Zhongmao Yuan Yawei Sun Xiaodi Liu Lihong Zhang Xueyi Liu Hongxing Ding Lin Yi Shuangqi Fan Jinding Chen Mingqiu Zhao Source Type: research
Evolutionary dynamics and adaptive analysis of Seneca Valley virus
In conclusion, our in-depth investigation into SVV's origin, dissemination, evolution, and adaptation emphasizes the significance of SVV surveillance and control measures.PMID:37558190 | DOI:10.1016/j.meegid.2023.105488 (Source: Infection, Genetics and Evolution)
Source: Infection, Genetics and Evolution - August 9, 2023 Category: Genetics & Stem Cells Authors: Weijun Zeng Quanhui Yan Pengfei Du Zhongmao Yuan Yawei Sun Xiaodi Liu Lihong Zhang Xueyi Liu Hongxing Ding Lin Yi Shuangqi Fan Jinding Chen Mingqiu Zhao Source Type: research
Evolutionary dynamics and adaptive analysis of Seneca Valley virus
In conclusion, our in-depth investigation into SVV's origin, dissemination, evolution, and adaptation emphasizes the significance of SVV surveillance and control measures.PMID:37558190 | DOI:10.1016/j.meegid.2023.105488 (Source: Infection, Genetics and Evolution)
Source: Infection, Genetics and Evolution - August 9, 2023 Category: Genetics & Stem Cells Authors: Weijun Zeng Quanhui Yan Pengfei Du Zhongmao Yuan Yawei Sun Xiaodi Liu Lihong Zhang Xueyi Liu Hongxing Ding Lin Yi Shuangqi Fan Jinding Chen Mingqiu Zhao Source Type: research
Dengue virus serotype 2 genotype III evolution during the 2019 outbreak in Mato Grosso, Midwestern Brazil
Infect Genet Evol. 2023 Aug 4:105487. doi: 10.1016/j.meegid.2023.105487. Online ahead of print.ABSTRACTDENV-2 was the main responsible for a 70% increase in dengue incidence in Brazil during 2019. That year, our metagenomic study by Illumina NextSeq on serum samples from acute febrile patients (n = 92) with suspected arbovirus infection, sampled in 22 cities of the state of Mato Grosso (MT), in the middle west of Brazil, revealed eight complete genomes and two near-complete sequences of DENV-2 genotype III, one Human parvovirus B19 genotype I (5,391 nt) and one Coxsackievirus A6 lineage D (4,514 nt). These sequences share ...
Source: Infection, Genetics and Evolution - August 6, 2023 Category: Genetics & Stem Cells Authors: Marcelo Adriano Mendes Dos Santos Janeth Aracely Ramirez Pavon Lucas Silva Dias Ana Elisa Viniski Claudio Luis Campos Souza Elaine Cristina de Oliveira Verg ínia Correa de Azevedo Sandro Patroca da Silva Ana Cec ília Ribeiro Cruz Daniele Barbosa de Alme Source Type: research
Dengue virus serotype 2 genotype III evolution during the 2019 outbreak in Mato Grosso, Midwestern Brazil
Infect Genet Evol. 2023 Aug 4:105487. doi: 10.1016/j.meegid.2023.105487. Online ahead of print.ABSTRACTDENV-2 was the main responsible for a 70% increase in dengue incidence in Brazil during 2019. That year, our metagenomic study by Illumina NextSeq on serum samples from acute febrile patients (n = 92) with suspected arbovirus infection, sampled in 22 cities of the state of Mato Grosso (MT), in the middle west of Brazil, revealed eight complete genomes and two near-complete sequences of DENV-2 genotype III, one Human parvovirus B19 genotype I (5,391 nt) and one Coxsackievirus A6 lineage D (4,514 nt). These sequences share ...
Source: Infection, Genetics and Evolution - August 6, 2023 Category: Genetics & Stem Cells Authors: Marcelo Adriano Mendes Dos Santos Janeth Aracely Ramirez Pavon Lucas Silva Dias Ana Elisa Viniski Claudio Luis Campos Souza Elaine Cristina de Oliveira Verg ínia Correa de Azevedo Sandro Patroca da Silva Ana Cec ília Ribeiro Cruz Daniele Barbosa de Alme Source Type: research
Dengue virus serotype 2 genotype III evolution during the 2019 outbreak in Mato Grosso, Midwestern Brazil
Infect Genet Evol. 2023 Aug 4:105487. doi: 10.1016/j.meegid.2023.105487. Online ahead of print.ABSTRACTDENV-2 was the main responsible for a 70% increase in dengue incidence in Brazil during 2019. That year, our metagenomic study by Illumina NextSeq on serum samples from acute febrile patients (n = 92) with suspected arbovirus infection, sampled in 22 cities of the state of Mato Grosso (MT), in the middle west of Brazil, revealed eight complete genomes and two near-complete sequences of DENV-2 genotype III, one Human parvovirus B19 genotype I (5,391 nt) and one Coxsackievirus A6 lineage D (4,514 nt). These sequences share ...
Source: Infection, Genetics and Evolution - August 6, 2023 Category: Genetics & Stem Cells Authors: Marcelo Adriano Mendes Dos Santos Janeth Aracely Ramirez Pavon Lucas Silva Dias Ana Elisa Viniski Claudio Luis Campos Souza Elaine Cristina de Oliveira Verg ínia Correa de Azevedo Sandro Patroca da Silva Ana Cec ília Ribeiro Cruz Daniele Barbosa de Alme Source Type: research
Genetic rearrangements in Pseudomonas amygdali pathovar aesculi shape coronatine plasmids
In this study, we have sequenced and analyzed the complete genome sequences of four Pseudomonas amygdali pv. aesculi (Pae), which infect European horse chestnut trees (Aesculus hippocastanum) and belong to phylogroup 3 of the P. syringae species complex. The four investigated genomes contain six groups of plasmids that all encode pathogenicity factors. Effector genes were found to be mostly associated with insertion sequence elements, suggesting that virulence genes are generally mobilized and potentially undergo horizontal gene transfer after transfer to a conjugative plasmid. We show that the biosynthetic gene cluster en...
Source: Infection, Genetics and Evolution - August 4, 2023 Category: Genetics & Stem Cells Authors: Tue Kj ærgaard Nielsen Caroline S Winther-Have Iben Margrete Thomsen Robert W Jackson Mojgan Rabiey Rosanna Catherine Hennessy Frederik Bak Witold Kot Mette Haubjerg Nicolaisen Alexander Byth Carstens Lars Hestbjerg Hansen Source Type: research
Genetic rearrangements in Pseudomonas amygdali pathovar aesculi shape coronatine plasmids
In this study, we have sequenced and analyzed the complete genome sequences of four Pseudomonas amygdali pv. aesculi (Pae), which infect European horse chestnut trees (Aesculus hippocastanum) and belong to phylogroup 3 of the P. syringae species complex. The four investigated genomes contain six groups of plasmids that all encode pathogenicity factors. Effector genes were found to be mostly associated with insertion sequence elements, suggesting that virulence genes are generally mobilized and potentially undergo horizontal gene transfer after transfer to a conjugative plasmid. We show that the biosynthetic gene cluster en...
Source: Infection, Genetics and Evolution - August 4, 2023 Category: Genetics & Stem Cells Authors: Tue Kj ærgaard Nielsen Caroline S Winther-Have Iben Margrete Thomsen Robert W Jackson Mojgan Rabiey Rosanna Catherine Hennessy Frederik Bak Witold Kot Mette Haubjerg Nicolaisen Alexander Byth Carstens Lars Hestbjerg Hansen Source Type: research
Population genetic characterization of (Aedes albopictus) mosquitoes (Diptera: Culicidae) from the Yangtze River Basin of China based on rDNA-ITS2
CONCLUSIONS: According to this study, the genetic diversity of Ae. albopictus populations in the Yangtze River Basin is high, the genetic differentiation among populations is small, and gene exchange is common. In addition, frequent interregional exchange exacerbates the abnormal spread of vectors. This study highlighted the potential spread route of the vector Ae. albopictus in the Yangtze River Basin. There are three potential dispersal routes for Ae. albopictus populations in the Yangtze River Basin. The findings could be helpful for effective surveillance and early warning of Ae. albopictus vectors.PMID:37536530 | DOI:...
Source: Infection, Genetics and Evolution - August 3, 2023 Category: Genetics & Stem Cells Authors: Zu Ma Dan Xing Qing Liu Jian Gao Ge Wang Chunxiao Li Xiaoxia Guo Yuting Jiang Teng Zhao Xinyu Zhou Hengduan Zhang Tongyan Zhao Source Type: research
Population genetic characterization of (Aedes albopictus) mosquitoes (Diptera: Culicidae) from the Yangtze River Basin of China based on rDNA-ITS2
CONCLUSIONS: According to this study, the genetic diversity of Ae. albopictus populations in the Yangtze River Basin is high, the genetic differentiation among populations is small, and gene exchange is common. In addition, frequent interregional exchange exacerbates the abnormal spread of vectors. This study highlighted the potential spread route of the vector Ae. albopictus in the Yangtze River Basin. There are three potential dispersal routes for Ae. albopictus populations in the Yangtze River Basin. The findings could be helpful for effective surveillance and early warning of Ae. albopictus vectors.PMID:37536530 | DOI:...
Source: Infection, Genetics and Evolution - August 3, 2023 Category: Genetics & Stem Cells Authors: Zu Ma Dan Xing Qing Liu Jian Gao Ge Wang Chunxiao Li Xiaoxia Guo Yuting Jiang Teng Zhao Xinyu Zhou Hengduan Zhang Tongyan Zhao Source Type: research
The utility of SARS-CoV-2 genomic data for informative clustering under different epidemiological scenarios and sampling
CONCLUSION: Differences in epidemiology and sampling can impact our ability to identify genomic clusters that describe the underlying population structure. These findings can help to guide recommendations for the use of pathogen clustering in public health investigations.PMID:37531976 | DOI:10.1016/j.meegid.2023.105484 (Source: Infection, Genetics and Evolution)
Source: Infection, Genetics and Evolution - August 2, 2023 Category: Genetics & Stem Cells Authors: Benjamin Sobkowiak Pouya Haghmaram Natalie Prystajecky James E A Zlosnik John Tyson Linda M N Hoang Caroline Colijn Source Type: research
The utility of SARS-CoV-2 genomic data for informative clustering under different epidemiological scenarios and sampling
CONCLUSION: Differences in epidemiology and sampling can impact our ability to identify genomic clusters that describe the underlying population structure. These findings can help to guide recommendations for the use of pathogen clustering in public health investigations.PMID:37531976 | DOI:10.1016/j.meegid.2023.105484 (Source: Infection, Genetics and Evolution)
Source: Infection, Genetics and Evolution - August 2, 2023 Category: Genetics & Stem Cells Authors: Benjamin Sobkowiak Pouya Haghmaram Natalie Prystajecky James E A Zlosnik John Tyson Linda M N Hoang Caroline Colijn Source Type: research
Molecular and genetic characterization of bovine parainfluenza type 3 European field and vaccine strains
In this study, we sequenced the full-genome and genetically characterized BPIV-3 strains isolated from animals displaying respiratory illness in France and Sweden, as well as the vaccine strains contained in three different commercialized vaccines. Our results show that the sequences from France and Sweden belong to genotype C. However, a third sequence from Sweden from 2017 clustered within genotype A. The sequencing of vaccine strains revealed that two of the vaccine strains clustered within genotype C, whereas the third vaccine strain belonged to genotype A. Altogether, our findings suggest that both genotypes A and C c...
Source: Infection, Genetics and Evolution - July 23, 2023 Category: Genetics & Stem Cells Authors: Maria Gaudino Jean-Fran çois Valarcher Sara H ägglund Katarina N äslund Siamak Zohari Mariette F Ducatez Gilles Meyer Source Type: research
Molecular and genetic characterization of bovine parainfluenza type 3 European field and vaccine strains
In this study, we sequenced the full-genome and genetically characterized BPIV-3 strains isolated from animals displaying respiratory illness in France and Sweden, as well as the vaccine strains contained in three different commercialized vaccines. Our results show that the sequences from France and Sweden belong to genotype C. However, a third sequence from Sweden from 2017 clustered within genotype A. The sequencing of vaccine strains revealed that two of the vaccine strains clustered within genotype C, whereas the third vaccine strain belonged to genotype A. Altogether, our findings suggest that both genotypes A and C c...
Source: Infection, Genetics and Evolution - July 23, 2023 Category: Genetics & Stem Cells Authors: Maria Gaudino Jean-Fran çois Valarcher Sara H ägglund Katarina N äslund Siamak Zohari Mariette F Ducatez Gilles Meyer Source Type: research
Molecular and genetic characterization of bovine parainfluenza type 3 European field and vaccine strains
In this study, we sequenced the full-genome and genetically characterized BPIV-3 strains isolated from animals displaying respiratory illness in France and Sweden, as well as the vaccine strains contained in three different commercialized vaccines. Our results show that the sequences from France and Sweden belong to genotype C. However, a third sequence from Sweden from 2017 clustered within genotype A. The sequencing of vaccine strains revealed that two of the vaccine strains clustered within genotype C, whereas the third vaccine strain belonged to genotype A. Altogether, our findings suggest that both genotypes A and C c...
Source: Infection, Genetics and Evolution - July 23, 2023 Category: Genetics & Stem Cells Authors: Maria Gaudino Jean-Fran çois Valarcher Sara H ägglund Katarina N äslund Siamak Zohari Mariette F Ducatez Gilles Meyer Source Type: research
