RCoV19: A One-stop Hub for SARS-CoV-2 Genome Data Integration, Variant Monitoring, and Risk Pre-warning
Genomics Proteomics Bioinformatics. 2023 Oct 26:S1672-0229(23)00116-X. doi: 10.1016/j.gpb.2023.10.004. Online ahead of print.ABSTRACTThe Resource for Coronavirus 2019 (RCoV19) is an open-access information resource dedicated to providing valuable data on the genomes, mutations, and variants of the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2). In this updated implementation of RCoV19, we have made significant improvements and advancements over the previous version. Firstly, we have implemented a highly refined genome data curation model. This model now features an automated integration pipeline and optimized...
Source: Genomics Proteomics ... - October 28, 2023 Category: Genetics & Stem Cells Authors: Cuiping Li Lina Ma Dong Zou Rongqin Zhang Xue Bai Lun Li Gangao Wu Tianhao Huang Wei Zhao Enhui Jin Yiming Bao Shuhui Song Source Type: research
The Rising Role of Omics and Meta-Omics in Table Olive Research
Foods. 2023 Oct 15;12(20):3783. doi: 10.3390/foods12203783.ABSTRACTTable olives are often the result of fermentation, a process where microorganisms transform raw materials into the final product. The microbial community can significantly impact the organoleptic characteristics and safety of table olives, and it is influenced by various factors, including the processing methods. Traditional culture-dependent techniques capture only a fraction of table olives' intricate microbiota, prompting a shift toward culture-independent methods to address this knowledge gap. This review explores recent advances in table olive research...
Source: Genomics Proteomics ... - October 28, 2023 Category: Genetics & Stem Cells Authors: Anastasios Tsoungos Violeta Pemaj Aleksandra Slavko John Kapolos Marina Papadelli Konstantinos Papadimitriou Source Type: research
The Dynamics of Nerve Degeneration and Regeneration in a Healthy Milieu and in Diabetes
Int J Mol Sci. 2023 Oct 16;24(20):15241. doi: 10.3390/ijms242015241.ABSTRACTAppropriate animal models, mimicking conditions of both health and disease, are needed to understand not only the biology and the physiology of neurons and other cells under normal conditions but also under stress conditions, like nerve injuries and neuropathy. In such conditions, understanding how genes and different factors are activated through the well-orchestrated programs in neurons and other related cells is crucial. Knowledge about key players associated with nerve regeneration intended for axonal outgrowth, migration of Schwann cells with ...
Source: Genomics Proteomics ... - October 28, 2023 Category: Genetics & Stem Cells Authors: Lars B Dahlin Source Type: research
RCoV19: A One-stop Hub for SARS-CoV-2 Genome Data Integration, Variant Monitoring, and Risk Pre-warning
Genomics Proteomics Bioinformatics. 2023 Oct 26:S1672-0229(23)00116-X. doi: 10.1016/j.gpb.2023.10.004. Online ahead of print.ABSTRACTThe Resource for Coronavirus 2019 (RCoV19) is an open-access information resource dedicated to providing valuable data on the genomes, mutations, and variants of the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2). In this updated implementation of RCoV19, we have made significant improvements and advancements over the previous version. Firstly, we have implemented a highly refined genome data curation model. This model now features an automated integration pipeline and optimized...
Source: Genomics Proteomics ... - October 28, 2023 Category: Genetics & Stem Cells Authors: Cuiping Li Lina Ma Dong Zou Rongqin Zhang Xue Bai Lun Li Gangao Wu Tianhao Huang Wei Zhao Enhui Jin Yiming Bao Shuhui Song Source Type: research
The Rising Role of Omics and Meta-Omics in Table Olive Research
Foods. 2023 Oct 15;12(20):3783. doi: 10.3390/foods12203783.ABSTRACTTable olives are often the result of fermentation, a process where microorganisms transform raw materials into the final product. The microbial community can significantly impact the organoleptic characteristics and safety of table olives, and it is influenced by various factors, including the processing methods. Traditional culture-dependent techniques capture only a fraction of table olives' intricate microbiota, prompting a shift toward culture-independent methods to address this knowledge gap. This review explores recent advances in table olive research...
Source: Genomics Proteomics ... - October 28, 2023 Category: Genetics & Stem Cells Authors: Anastasios Tsoungos Violeta Pemaj Aleksandra Slavko John Kapolos Marina Papadelli Konstantinos Papadimitriou Source Type: research
The Dynamics of Nerve Degeneration and Regeneration in a Healthy Milieu and in Diabetes
Int J Mol Sci. 2023 Oct 16;24(20):15241. doi: 10.3390/ijms242015241.ABSTRACTAppropriate animal models, mimicking conditions of both health and disease, are needed to understand not only the biology and the physiology of neurons and other cells under normal conditions but also under stress conditions, like nerve injuries and neuropathy. In such conditions, understanding how genes and different factors are activated through the well-orchestrated programs in neurons and other related cells is crucial. Knowledge about key players associated with nerve regeneration intended for axonal outgrowth, migration of Schwann cells with ...
Source: Genomics Proteomics ... - October 28, 2023 Category: Genetics & Stem Cells Authors: Lars B Dahlin Source Type: research
RCoV19: A One-stop Hub for SARS-CoV-2 Genome Data Integration, Variant Monitoring, and Risk Pre-warning
Genomics Proteomics Bioinformatics. 2023 Oct 26:S1672-0229(23)00116-X. doi: 10.1016/j.gpb.2023.10.004. Online ahead of print.ABSTRACTThe Resource for Coronavirus 2019 (RCoV19) is an open-access information resource dedicated to providing valuable data on the genomes, mutations, and variants of the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2). In this updated implementation of RCoV19, we have made significant improvements and advancements over the previous version. Firstly, we have implemented a highly refined genome data curation model. This model now features an automated integration pipeline and optimized...
Source: Genomics Proteomics ... - October 28, 2023 Category: Genetics & Stem Cells Authors: Cuiping Li Lina Ma Dong Zou Rongqin Zhang Xue Bai Lun Li Gangao Wu Tianhao Huang Wei Zhao Enhui Jin Yiming Bao Shuhui Song Source Type: research
The Rising Role of Omics and Meta-Omics in Table Olive Research
Foods. 2023 Oct 15;12(20):3783. doi: 10.3390/foods12203783.ABSTRACTTable olives are often the result of fermentation, a process where microorganisms transform raw materials into the final product. The microbial community can significantly impact the organoleptic characteristics and safety of table olives, and it is influenced by various factors, including the processing methods. Traditional culture-dependent techniques capture only a fraction of table olives' intricate microbiota, prompting a shift toward culture-independent methods to address this knowledge gap. This review explores recent advances in table olive research...
Source: Genomics Proteomics ... - October 28, 2023 Category: Genetics & Stem Cells Authors: Anastasios Tsoungos Violeta Pemaj Aleksandra Slavko John Kapolos Marina Papadelli Konstantinos Papadimitriou Source Type: research
The Dynamics of Nerve Degeneration and Regeneration in a Healthy Milieu and in Diabetes
Int J Mol Sci. 2023 Oct 16;24(20):15241. doi: 10.3390/ijms242015241.ABSTRACTAppropriate animal models, mimicking conditions of both health and disease, are needed to understand not only the biology and the physiology of neurons and other cells under normal conditions but also under stress conditions, like nerve injuries and neuropathy. In such conditions, understanding how genes and different factors are activated through the well-orchestrated programs in neurons and other related cells is crucial. Knowledge about key players associated with nerve regeneration intended for axonal outgrowth, migration of Schwann cells with ...
Source: Genomics Proteomics ... - October 28, 2023 Category: Genetics & Stem Cells Authors: Lars B Dahlin Source Type: research
An Integrated Multi-Omics and Artificial Intelligence Framework for Advance Plant Phenotyping in Horticulture
Biology (Basel). 2023 Sep 30;12(10):1298. doi: 10.3390/biology12101298.ABSTRACTThis review discusses the transformative potential of integrating multi-omics data and artificial intelligence (AI) in advancing horticultural research, specifically plant phenotyping. The traditional methods of plant phenotyping, while valuable, are limited in their ability to capture the complexity of plant biology. The advent of (meta-)genomics, (meta-)transcriptomics, proteomics, and metabolomics has provided an opportunity for a more comprehensive analysis. AI and machine learning (ML) techniques can effectively handle the complexity and vo...
Source: Genomics Proteomics ... - October 27, 2023 Category: Genetics & Stem Cells Authors: Danuta Cembrowska-Lech Adrianna Krzemi ńska Tymoteusz Miller Anna Nowakowska Cezary Adamski Martyna Radaczy ńska Grzegorz Mikiciuk Ma łgorzata Mikiciuk Source Type: research
Potential Common Molecular Mechanisms Between Periodontitis and Hepatocellular Carcinoma: A Bioinformatic Analysis and Validation
CONCLUSION: Periodontitis may affect the occurrence of HCC by changing the immune and inflammatory response, the cell cycle and liver metabolic function. MSH2, GRAMD1C and CTHRC1 are potential prognostic biomarkers for HCC.PMID:37889061 | DOI:10.21873/cgp.20409 (Source: Genomics Proteomics ...)
Source: Genomics Proteomics ... - October 27, 2023 Category: Genetics & Stem Cells Authors: Xiaomiao Fan Zimin Song Wenguang Qin Ting Yu Baogang Peng Yuqin Shen Source Type: research
Using Comparative Proteomics to Identify Protein Signatures in Clear Cell Renal Cell Carcinoma
CONCLUSION: Comparative proteomics analysis of ccRCC tissues provided new evidence of SERPINA3 association with ccRCC progression.PMID:37889066 | DOI:10.21873/cgp.20408 (Source: Genomics Proteomics ...)
Source: Genomics Proteomics ... - October 27, 2023 Category: Genetics & Stem Cells Authors: Juhee Park Eun Hye Lee Hyunchae Sim Ann-Yae Na So Young Choi Jae-Wook Chung Yun-Sok Ha Tae Gyun Kwon Sangkyu Lee Jun Nyung Lee Source Type: research
Filter and Wrapper Stacking Ensemble (FWSE): a robust approach for reliable biomarker discovery in high-dimensional omics data
Brief Bioinform. 2023 Sep 22;24(6):bbad382. doi: 10.1093/bib/bbad382.ABSTRACTSelecting informative features, such as accurate biomarkers for disease diagnosis, prognosis and response to treatment, is an essential task in the field of bioinformatics. Medical data often contain thousands of features and identifying potential biomarkers is challenging due to small number of samples in the data, method dependence and non-reproducibility. This paper proposes a novel ensemble feature selection method, named Filter and Wrapper Stacking Ensemble (FWSE), to identify reproducible biomarkers from high-dimensional omics data. In FWSE,...
Source: Genomics Proteomics ... - October 27, 2023 Category: Genetics & Stem Cells Authors: Sugam Budhraja Maryam Doborjeh Balkaran Singh Samuel Tan Zohreh Doborjeh Edmund Lai Alexander Merkin Jimmy Lee Wilson Goh Nikola Kasabov Source Type: research
An Integrated Multi-Omics and Artificial Intelligence Framework for Advance Plant Phenotyping in Horticulture
Biology (Basel). 2023 Sep 30;12(10):1298. doi: 10.3390/biology12101298.ABSTRACTThis review discusses the transformative potential of integrating multi-omics data and artificial intelligence (AI) in advancing horticultural research, specifically plant phenotyping. The traditional methods of plant phenotyping, while valuable, are limited in their ability to capture the complexity of plant biology. The advent of (meta-)genomics, (meta-)transcriptomics, proteomics, and metabolomics has provided an opportunity for a more comprehensive analysis. AI and machine learning (ML) techniques can effectively handle the complexity and vo...
Source: Genomics Proteomics ... - October 27, 2023 Category: Genetics & Stem Cells Authors: Danuta Cembrowska-Lech Adrianna Krzemi ńska Tymoteusz Miller Anna Nowakowska Cezary Adamski Martyna Radaczy ńska Grzegorz Mikiciuk Ma łgorzata Mikiciuk Source Type: research
Potential Common Molecular Mechanisms Between Periodontitis and Hepatocellular Carcinoma: A Bioinformatic Analysis and Validation
CONCLUSION: Periodontitis may affect the occurrence of HCC by changing the immune and inflammatory response, the cell cycle and liver metabolic function. MSH2, GRAMD1C and CTHRC1 are potential prognostic biomarkers for HCC.PMID:37889061 | DOI:10.21873/cgp.20409 (Source: Genomics Proteomics ...)
Source: Genomics Proteomics ... - October 27, 2023 Category: Genetics & Stem Cells Authors: Xiaomiao Fan Zimin Song Wenguang Qin Ting Yu Baogang Peng Yuqin Shen Source Type: research
