2018 –2019 field seasons of the Maize Genomes to Fields (G2F) G x E project
This report provides information about the public release of the 2018 –2019 Maize G X E project of the Genomes to Fields (G2F) Initiative datasets. G2F is an umbrella initiative that evaluates maize hybrids and... (Source: BMC Genetics)
Source: BMC Genetics - May 25, 2023 Category: Genetics & Stem Cells Authors: Dayane Cristina Lima, Alejandro Castro Aviles, Ryan Timothy Alpers, Bridget A. McFarland, Shawn Kaeppler, David Ertl, Maria Cinta Romay, Joseph L. Gage, James Holland, Timothy Beissinger, Martin Bohn, Edward Buckler, Jode Edwards, Sherry Flint-Garcia, Can Tags: Data note Source Type: research
Polygenic scores for estimated glomerular filtration rate in a population of general adults and elderly – comparative results from the KORA and AugUR study
Polygenic scores (PGSs) combining genetic variants found to be associated with creatinine-based estimated glomerular filtration rate (eGFRcrea) have been applied in various study populations with different age ra... (Source: BMC Genetics)
Source: BMC Genetics - May 25, 2023 Category: Genetics & Stem Cells Authors: Janina M. Herold, Jana Nano, Mathias Gorski, Thomas W. Winkler, Kira J. Stanzick, Martina E. Zimmermann, Caroline Brandl, Annette Peters, Wolfgang Koenig, Ralph Burkhardt, Andr é Gessner, Iris M. Heid, Christian Gieger and Klaus J. Stark Tags: Research Source Type: research
Identification, evolution and expression analyses of the whole genome-wide PEBP gene family in Brassica napus L.
With the release of genomic data for B.rapa, B.oleracea, and B.napus, research on the genetic and molecular functions of Brassica spp. has entered a new stage. PEBP genes in plants play an important role in the t... (Source: BMC Genetics)
Source: BMC Genetics - May 3, 2023 Category: Genetics & Stem Cells Authors: Yanling Li, Lu Xiao, Zhi Zhao, Hongping Zhao and Dezhi Du Tags: Research Source Type: research
HostSeq: a Canadian whole genome sequencing and clinical data resource
HostSeq was launched in April 2020 as a national initiative to integrate whole genome sequencing data from 10,000 Canadians infected with SARS-CoV-2 with clinical information related to their disease experienc... (Source: BMC Genetics)
Source: BMC Genetics - May 2, 2023 Category: Genetics & Stem Cells Authors: S Yoo, E Garg, LT Elliott, RJ Hung, AR Halevy, JD Brooks, SB Bull, F Gagnon, CMT Greenwood, JF Lawless, AD Paterson, L Sun, MH Zawati, J Lerner-Ellis, RJS Abraham, I Birol & hellip; Tags: Database Source Type: research
Genomic benchmarks: a collection of datasets for genomic sequence classification
Recently, deep neural networks have been successfully applied in many biological fields. In 2020, a deep learning model AlphaFold won the protein folding competition with predicted structures within the error ... (Source: BMC Genetics)
Source: BMC Genetics - May 1, 2023 Category: Genetics & Stem Cells Authors: Katar ína Grešová, Vlastimil Martinek, David Čechák, Petr Šimeček and Panagiotis Alexiou Tags: Database Source Type: research
Multi-omics data of gastric cancer cell lines
Gastric cancer (GC) is the fourth most common cancer worldwide, with the highest incidence and mortality regardless of sex. Despite technological advances in diagnosing and treating gastric cancer, GC still ha... (Source: BMC Genetics)
Source: BMC Genetics - April 20, 2023 Category: Genetics & Stem Cells Authors: Eun-Hye Seo, Yun-Jae Shin, Hee-Jin Kim, Jeong-Hwan Kim, Yong Sung Kim and Seon-Young Kim Tags: Data note Source Type: research
Global transcriptomic analysis of Francisella tularensis SchuS4 differentially expressed genes in response to doxycycline or ciprofloxacin exposure
As part of a research aiming at presenting an alternative approach for rapid determination of antimicrobial susceptibility by quantification of changes in expression levels of specific marker genes and gene se... (Source: BMC Genetics)
Source: BMC Genetics - April 19, 2023 Category: Genetics & Stem Cells Authors: Galia Zaide, Inbar Cohen-Gihon, Ohad Shifman, Ofir Israeli, Moshe Aftalion, Sharon Maoz, Theodor Chitlaru, Raphael Ber, Anat Zvi and Ida Steinberger-Levy Tags: Data note Source Type: research
Identification of novel biomarkers linking depressive disorder and Alzheimer ’s disease based on an integrative bioinformatics analysis
Previous reports revealed that a history of major depressive disorder (MDD) increased the risk of Alzheimer ’s disease (AD). The immune disorder is associated with MDD and AD pathophysiology. We aimed to identi... (Source: BMC Genetics)
Source: BMC Genetics - April 15, 2023 Category: Genetics & Stem Cells Authors: Jin Song, Zilong Ma, Huishi Zhang, Ting Liang and Jun Zhang Tags: Research Source Type: research
Draft genome and transcriptome of Nepenthes mirabilis, a carnivorous plant in China
Nepenthes belongs to the monotypic family Nepenthaceae, one of the largest carnivorous plant families. Nepenthes species show impressive adaptive radiation and suffer from being overexploited in nature. Nepenthes... (Source: BMC Genetics)
Source: BMC Genetics - April 14, 2023 Category: Genetics & Stem Cells Authors: Yuan Gao, Hao-Bin Liao, Ting-Hong Liu, Jia-Ming Wu, Zheng-Feng Wang and Hong-Lin Cao Tags: Data note Source Type: research
Identification of immune-related molecular markers in intracranial aneurysm (IA) based on machine learning and cytoscape-cytohubba plug-in
Intracranial aneurysm (IA) is a common cerebrovascular disease. The immune mechanism of IA is more complicated, and it is unclear so far. Therefore, it is necessary to continue to explore the immune related mo... (Source: BMC Genetics)
Source: BMC Genetics - April 11, 2023 Category: Genetics & Stem Cells Authors: Zhengfei Ma, Ping Zhong, Peidong Yue and Zhongwu Sun Tags: Research Source Type: research
Comparative genomic analysis of two ST320 Streptococcus pneumoniae isolates, representing serotypes 19A and 19F
Streptococcus pneumoniae (pneumococcus) represents an important human pathogen, responsible for respiratory and invasive infections in the community. The efficacy of polysaccharide conjugate vaccines formulated a... (Source: BMC Genetics)
Source: BMC Genetics - April 10, 2023 Category: Genetics & Stem Cells Authors: Weronika Puzia, Jan Gawor, Robert Gromadka, Anna Skoczy ńska and Ewa Sadowy Tags: Research Source Type: research
Mare-MAGE curated reference database of fish mitochondrial genes
Biodiversity assessment approaches based on molecular biology techniques such as metabarcoding, RAD-seq, or SnaPshot sequencing are increasingly applied in assessing marine and aquatic ecosystems. Here we pres... (Source: BMC Genetics)
Source: BMC Genetics - March 17, 2023 Category: Genetics & Stem Cells Authors: Yassine Kasmi, Erik Eschbach and Reinhold Hanel Tags: Database Source Type: research
Full-length transcriptome profiling for fruit development in Diospyros oleifera using nanopore sequencing
Diospyros oleifera, one of the most economically important Diospyros species, is an ideal model for studying the fruit development of persimmon. While, the lack of whole-transcriptome has hindered the complex tra... (Source: BMC Genetics)
Source: BMC Genetics - March 13, 2023 Category: Genetics & Stem Cells Authors: Yang Xu, Cui-yu Liu, Wen-qiang Cheng, Kai-yun Wu and Bang-chu Gong Tags: Data note Source Type: research
Draft genome sequence of Enterobacter chengduensis ECC445, isolated from fresh water in the West Indies
The Enterobacter cloacae complex is considered an important opportunistic pathogen. It comprises many members that remain difficult to delineate by phenotypic approaches. Despite its importance in human infection... (Source: BMC Genetics)
Source: BMC Genetics - March 11, 2023 Category: Genetics & Stem Cells Authors: Matthieu Pot, C élia Ducat, Yann Reynaud, David Couvin, Séverine Ferdinand, Sébastien Breurec, Antoine Talarmin and Stéphanie Guyomard-Rabenirina Tags: Data note Source Type: research
De novo transcriptome assemblies of five major European oilseed rape insect pests
Insect pests can cause severe losses in oilseed rape yields across Europe. Genomic and transcriptomic information is very limited for these insects. The aim of our study was to provide transcriptomic resources... (Source: BMC Genetics)
Source: BMC Genetics - March 10, 2023 Category: Genetics & Stem Cells Authors: Salma Sana, Ines Vollhardt, Katharina Kubon, Michael Rost ás and Stefan Scholten Tags: Data note Source Type: research
