Genetic diversity patterns in farmed rainbow trout (Oncorhynchus mykiss) populations using genome-wide SNP and haplotype data
Anim Genet. 2023 Nov 23. doi: 10.1111/age.13378. Online ahead of print.ABSTRACTRainbow trout is one of the most popular aquaculture species worldwide, with a long history of domestication. However, limited information exists about the genetic diversity of farmed rainbow trout populations globally, with most available reports relying on low-throughput genotyping technologies. Notably, no information exists about the genetic diversity status of farmed rainbow trout in Sweden. Double-digest restriction-site-associated DNA sequencing was performed on more than 500 broodfish from two leading producers in Sweden and from the cou...
Source: Animal Genetics - November 23, 2023 Category: Genetics & Stem Cells Authors: Alessio Longo Khrystyna Kurta Tytti Vanhala Henrik Jeuthe Dirk-Jan de Koning Christos Palaiokostas Source Type: research
Genome-wide analyses based on a novel donkey 40K liquid chip reveal the gene responsible for coat color diversity in Chinese Dezhou donkey
In this study, genome-wide association analysis was performed for the differences in coat color traits between the Sanfen (n = 97) and Wutou (n = 108) strains using a novel donkey 40K liquid chip developed based on GenoBaits technology, to identify genomic regions and causal genes that could explain this variation. We also used FST and The cross-population composite likelihood ratio test (XPCLR) analyses to explore selected regions related to coat color differences. We identified one significant region on chromosome 15, with the most significant SNP located within the agouti signaling protein (ASIP) gene. At the same time,...
Source: Animal Genetics - November 23, 2023 Category: Genetics & Stem Cells Authors: Shuqin Liu Jiangtian Su Qiwen Yang Minhao Sun Zhaofei Wang Jie Yu Halima Jafari Chuzhao Lei Yujiang Sun Ruihua Dang Source Type: research
Genetic diversity patterns in farmed rainbow trout (Oncorhynchus mykiss) populations using genome-wide SNP and haplotype data
Anim Genet. 2023 Nov 23. doi: 10.1111/age.13378. Online ahead of print.ABSTRACTRainbow trout is one of the most popular aquaculture species worldwide, with a long history of domestication. However, limited information exists about the genetic diversity of farmed rainbow trout populations globally, with most available reports relying on low-throughput genotyping technologies. Notably, no information exists about the genetic diversity status of farmed rainbow trout in Sweden. Double-digest restriction-site-associated DNA sequencing was performed on more than 500 broodfish from two leading producers in Sweden and from the cou...
Source: Animal Genetics - November 23, 2023 Category: Genetics & Stem Cells Authors: Alessio Longo Khrystyna Kurta Tytti Vanhala Henrik Jeuthe Dirk-Jan de Koning Christos Palaiokostas Source Type: research
Genome-wide analyses based on a novel donkey 40K liquid chip reveal the gene responsible for coat color diversity in Chinese Dezhou donkey
In this study, genome-wide association analysis was performed for the differences in coat color traits between the Sanfen (n = 97) and Wutou (n = 108) strains using a novel donkey 40K liquid chip developed based on GenoBaits technology, to identify genomic regions and causal genes that could explain this variation. We also used FST and The cross-population composite likelihood ratio test (XPCLR) analyses to explore selected regions related to coat color differences. We identified one significant region on chromosome 15, with the most significant SNP located within the agouti signaling protein (ASIP) gene. At the same time,...
Source: Animal Genetics - November 23, 2023 Category: Genetics & Stem Cells Authors: Shuqin Liu Jiangtian Su Qiwen Yang Minhao Sun Zhaofei Wang Jie Yu Halima Jafari Chuzhao Lei Yujiang Sun Ruihua Dang Source Type: research
Genetic diversity patterns in farmed rainbow trout (Oncorhynchus mykiss) populations using genome-wide SNP and haplotype data
Anim Genet. 2023 Nov 23. doi: 10.1111/age.13378. Online ahead of print.ABSTRACTRainbow trout is one of the most popular aquaculture species worldwide, with a long history of domestication. However, limited information exists about the genetic diversity of farmed rainbow trout populations globally, with most available reports relying on low-throughput genotyping technologies. Notably, no information exists about the genetic diversity status of farmed rainbow trout in Sweden. Double-digest restriction-site-associated DNA sequencing was performed on more than 500 broodfish from two leading producers in Sweden and from the cou...
Source: Animal Genetics - November 23, 2023 Category: Genetics & Stem Cells Authors: Alessio Longo Khrystyna Kurta Tytti Vanhala Henrik Jeuthe Dirk-Jan de Koning Christos Palaiokostas Source Type: research
Genome-wide analyses based on a novel donkey 40K liquid chip reveal the gene responsible for coat color diversity in Chinese Dezhou donkey
In this study, genome-wide association analysis was performed for the differences in coat color traits between the Sanfen (n = 97) and Wutou (n = 108) strains using a novel donkey 40K liquid chip developed based on GenoBaits technology, to identify genomic regions and causal genes that could explain this variation. We also used FST and The cross-population composite likelihood ratio test (XPCLR) analyses to explore selected regions related to coat color differences. We identified one significant region on chromosome 15, with the most significant SNP located within the agouti signaling protein (ASIP) gene. At the same time,...
Source: Animal Genetics - November 23, 2023 Category: Genetics & Stem Cells Authors: Shuqin Liu Jiangtian Su Qiwen Yang Minhao Sun Zhaofei Wang Jie Yu Halima Jafari Chuzhao Lei Yujiang Sun Ruihua Dang Source Type: research
Genetic diversity patterns in farmed rainbow trout (Oncorhynchus mykiss) populations using genome-wide SNP and haplotype data
Anim Genet. 2023 Nov 23. doi: 10.1111/age.13378. Online ahead of print.ABSTRACTRainbow trout is one of the most popular aquaculture species worldwide, with a long history of domestication. However, limited information exists about the genetic diversity of farmed rainbow trout populations globally, with most available reports relying on low-throughput genotyping technologies. Notably, no information exists about the genetic diversity status of farmed rainbow trout in Sweden. Double-digest restriction-site-associated DNA sequencing was performed on more than 500 broodfish from two leading producers in Sweden and from the cou...
Source: Animal Genetics - November 23, 2023 Category: Genetics & Stem Cells Authors: Alessio Longo Khrystyna Kurta Tytti Vanhala Henrik Jeuthe Dirk-Jan de Koning Christos Palaiokostas Source Type: research
Genome-wide analyses based on a novel donkey 40K liquid chip reveal the gene responsible for coat color diversity in Chinese Dezhou donkey
In this study, genome-wide association analysis was performed for the differences in coat color traits between the Sanfen (n = 97) and Wutou (n = 108) strains using a novel donkey 40K liquid chip developed based on GenoBaits technology, to identify genomic regions and causal genes that could explain this variation. We also used FST and The cross-population composite likelihood ratio test (XPCLR) analyses to explore selected regions related to coat color differences. We identified one significant region on chromosome 15, with the most significant SNP located within the agouti signaling protein (ASIP) gene. At the same time,...
Source: Animal Genetics - November 23, 2023 Category: Genetics & Stem Cells Authors: Shuqin Liu Jiangtian Su Qiwen Yang Minhao Sun Zhaofei Wang Jie Yu Halima Jafari Chuzhao Lei Yujiang Sun Ruihua Dang Source Type: research
Genetic diversity patterns in farmed rainbow trout (Oncorhynchus mykiss) populations using genome-wide SNP and haplotype data
Anim Genet. 2023 Nov 23. doi: 10.1111/age.13378. Online ahead of print.ABSTRACTRainbow trout is one of the most popular aquaculture species worldwide, with a long history of domestication. However, limited information exists about the genetic diversity of farmed rainbow trout populations globally, with most available reports relying on low-throughput genotyping technologies. Notably, no information exists about the genetic diversity status of farmed rainbow trout in Sweden. Double-digest restriction-site-associated DNA sequencing was performed on more than 500 broodfish from two leading producers in Sweden and from the cou...
Source: Animal Genetics - November 23, 2023 Category: Genetics & Stem Cells Authors: Alessio Longo Khrystyna Kurta Tytti Vanhala Henrik Jeuthe Dirk-Jan de Koning Christos Palaiokostas Source Type: research
Genome-wide analyses based on a novel donkey 40K liquid chip reveal the gene responsible for coat color diversity in Chinese Dezhou donkey
In this study, genome-wide association analysis was performed for the differences in coat color traits between the Sanfen (n = 97) and Wutou (n = 108) strains using a novel donkey 40K liquid chip developed based on GenoBaits technology, to identify genomic regions and causal genes that could explain this variation. We also used FST and The cross-population composite likelihood ratio test (XPCLR) analyses to explore selected regions related to coat color differences. We identified one significant region on chromosome 15, with the most significant SNP located within the agouti signaling protein (ASIP) gene. At the same time,...
Source: Animal Genetics - November 23, 2023 Category: Genetics & Stem Cells Authors: Shuqin Liu Jiangtian Su Qiwen Yang Minhao Sun Zhaofei Wang Jie Yu Halima Jafari Chuzhao Lei Yujiang Sun Ruihua Dang Source Type: research
Genetic diversity patterns in farmed rainbow trout (Oncorhynchus mykiss) populations using genome-wide SNP and haplotype data
Anim Genet. 2023 Nov 23. doi: 10.1111/age.13378. Online ahead of print.ABSTRACTRainbow trout is one of the most popular aquaculture species worldwide, with a long history of domestication. However, limited information exists about the genetic diversity of farmed rainbow trout populations globally, with most available reports relying on low-throughput genotyping technologies. Notably, no information exists about the genetic diversity status of farmed rainbow trout in Sweden. Double-digest restriction-site-associated DNA sequencing was performed on more than 500 broodfish from two leading producers in Sweden and from the cou...
Source: Animal Genetics - November 23, 2023 Category: Genetics & Stem Cells Authors: Alessio Longo Khrystyna Kurta Tytti Vanhala Henrik Jeuthe Dirk-Jan de Koning Christos Palaiokostas Source Type: research
Genome-wide analyses based on a novel donkey 40K liquid chip reveal the gene responsible for coat color diversity in Chinese Dezhou donkey
In this study, genome-wide association analysis was performed for the differences in coat color traits between the Sanfen (n = 97) and Wutou (n = 108) strains using a novel donkey 40K liquid chip developed based on GenoBaits technology, to identify genomic regions and causal genes that could explain this variation. We also used FST and The cross-population composite likelihood ratio test (XPCLR) analyses to explore selected regions related to coat color differences. We identified one significant region on chromosome 15, with the most significant SNP located within the agouti signaling protein (ASIP) gene. At the same time,...
Source: Animal Genetics - November 23, 2023 Category: Genetics & Stem Cells Authors: Shuqin Liu Jiangtian Su Qiwen Yang Minhao Sun Zhaofei Wang Jie Yu Halima Jafari Chuzhao Lei Yujiang Sun Ruihua Dang Source Type: research
Genetic diversity patterns in farmed rainbow trout (Oncorhynchus mykiss) populations using genome-wide SNP and haplotype data
Anim Genet. 2023 Nov 23. doi: 10.1111/age.13378. Online ahead of print.ABSTRACTRainbow trout is one of the most popular aquaculture species worldwide, with a long history of domestication. However, limited information exists about the genetic diversity of farmed rainbow trout populations globally, with most available reports relying on low-throughput genotyping technologies. Notably, no information exists about the genetic diversity status of farmed rainbow trout in Sweden. Double-digest restriction-site-associated DNA sequencing was performed on more than 500 broodfish from two leading producers in Sweden and from the cou...
Source: Animal Genetics - November 23, 2023 Category: Genetics & Stem Cells Authors: Alessio Longo Khrystyna Kurta Tytti Vanhala Henrik Jeuthe Dirk-Jan de Koning Christos Palaiokostas Source Type: research
Genome-wide analyses based on a novel donkey 40K liquid chip reveal the gene responsible for coat color diversity in Chinese Dezhou donkey
In this study, genome-wide association analysis was performed for the differences in coat color traits between the Sanfen (n = 97) and Wutou (n = 108) strains using a novel donkey 40K liquid chip developed based on GenoBaits technology, to identify genomic regions and causal genes that could explain this variation. We also used FST and The cross-population composite likelihood ratio test (XPCLR) analyses to explore selected regions related to coat color differences. We identified one significant region on chromosome 15, with the most significant SNP located within the agouti signaling protein (ASIP) gene. At the same time,...
Source: Animal Genetics - November 23, 2023 Category: Genetics & Stem Cells Authors: Shuqin Liu Jiangtian Su Qiwen Yang Minhao Sun Zhaofei Wang Jie Yu Halima Jafari Chuzhao Lei Yujiang Sun Ruihua Dang Source Type: research
Genetic diversity patterns in farmed rainbow trout (Oncorhynchus mykiss) populations using genome-wide SNP and haplotype data
Anim Genet. 2023 Nov 23. doi: 10.1111/age.13378. Online ahead of print.ABSTRACTRainbow trout is one of the most popular aquaculture species worldwide, with a long history of domestication. However, limited information exists about the genetic diversity of farmed rainbow trout populations globally, with most available reports relying on low-throughput genotyping technologies. Notably, no information exists about the genetic diversity status of farmed rainbow trout in Sweden. Double-digest restriction-site-associated DNA sequencing was performed on more than 500 broodfish from two leading producers in Sweden and from the cou...
Source: Animal Genetics - November 23, 2023 Category: Genetics & Stem Cells Authors: Alessio Longo Khrystyna Kurta Tytti Vanhala Henrik Jeuthe Dirk-Jan de Koning Christos Palaiokostas Source Type: research
