DhuFAP: a platform for gene functional analysis in Dendrobium huoshanense
Dendrobium huoshanense, a traditional medicinal and food plant, has a rich history of use. Recently, its genome was decoded, offering valuable insights into gene function. However, there is no comprehensive gene ... (Source: BMC Genomics)
Source: BMC Genomics - April 4, 2024 Category: Genetics & Stem Cells Authors: Qiaoqiao Xiao, Qi Pan, Jun Li, Jinqiang Zhang and Jiaotong Yang Tags: Database Source Type: research
Karyotype and LTR-RTs analysis provide insights into oak genomic evolution
Whole-genome duplication and long terminal repeat retrotransposons (LTR-RTs) amplification in organisms are essential factors that affect speciation, local adaptation, and diversification of organisms. Underst... (Source: BMC Genomics)
Source: BMC Genomics - April 3, 2024 Category: Genetics & Stem Cells Authors: Rui-Bin Cao, Ran Chen, Ke-Xin Liao, He Li, Gang-Biao Xu and Xiao-Long Jiang Tags: Research Source Type: research
Impacts of longitudinal water curtain cooling system on transcriptome-related immunity in ducks
This study showed the variations in environmental conditions in close... (Source: BMC Genomics)
Source: BMC Genomics - April 3, 2024 Category: Genetics & Stem Cells Authors: Qian Hu, Tao Zhang, Hua He, Fajun Pu, Rongping Zhang, Liang Li, Jiwei Hu, Lili Bai, Chunchun Han, Jiwen Wang and Hehe Liu Tags: Research Source Type: research
Haplotype-resolved genome of Mimosa bimucronata revealed insights into leaf movement and nitrogen fixation
Mimosa bimucronata originates from tropical America and exhibits distinctive leaf movement characterized by a relative slow speed. Additionally, this species possesses the ability to fix nitrogen. Despite these i... (Source: BMC Genomics)
Source: BMC Genomics - April 3, 2024 Category: Genetics & Stem Cells Authors: Haifeng Jia, Jishan Lin, Zhicong Lin, Yibin Wang, Liangwei Xu, Wenjie Ding and Ray Ming Tags: Research Source Type: research
A high heterozygosity genome assembly of Aedes albopictus enables the discovery of the association of PGANT3 with blood-feeding behavior
The Asian tiger mosquito, Aedes albopictus, is a global invasive species, notorious for its role in transmitting dangerous human arboviruses such as dengue and Chikungunya. Although hematophagous behavior is repu... (Source: BMC Genomics)
Source: BMC Genomics - April 3, 2024 Category: Genetics & Stem Cells Authors: Yuhua Deng, Shuyi Ren, Qiong Liu, Dan Zhou, Caimei Zhong, Yabin Jin, Lihua Xie, Jinbao Gu and Chuanle Xiao Tags: Research Source Type: research
Haplotype diversity of 17 Y-STR in the Iranian population
The current study aimed to evaluate Y chromosome haplotypes obtained from 1353 unrelated Iranian males using the AmpFlSTRTM YfilerTM kit; 1353 out of the 1353 identified haplotypes were unique. The haplotype d... (Source: BMC Genomics)
Source: BMC Genomics - April 2, 2024 Category: Genetics & Stem Cells Authors: Mohammad Reza Eskandarion, Arash Alipour Tabrizi, Reza Shirkoohi, Reza Raoofian, Masume Naji, Reza Pazhoomand, Hooman Salari, Bahram Samadirad, Alireza Sabouri, Mostafa Montazer Zohour, Hadi Namazi, Pegah Farhadi, Zohre Baratieh, Minoo Sayyari, Maliheh Da Tags: Research Source Type: research
Transcriptomic changes in the microsporidia proliferation and host responses in congenitally infected embryos and larvae
Congenital infection caused by vertical transmission of microsporidia N. bombycis can result in severe economic losses in the silkworm-rearing industry. Whole-transcriptome analyses have revealed non-coding RNAs ... (Source: BMC Genomics)
Source: BMC Genomics - April 1, 2024 Category: Genetics & Stem Cells Authors: Zigang Shen, Zhuojun Ke, Qiong Yang, Samson Teweldeberhan Ghebremichael, Tangxin Li, Tian Li, Jie Chen, Xianzhi Meng, Heng Xiang, Chunfeng Li, Zeyang Zhou, Guoqing Pan and Ping Chen Tags: Research Source Type: research
Assembly and comparative analysis of the initial complete mitochondrial genome of Primulina hunanensis (Gesneriaceae): a cave-dwelling endangered plant
Primulina hunanensis, a troglobitic plant within the Primulina genus of Gesneriaceae family, exhibits robust resilience to arid conditions and holds great horticultural potential as an ornamental plant. The work ... (Source: BMC Genomics)
Source: BMC Genomics - April 1, 2024 Category: Genetics & Stem Cells Authors: Lingling Chen, Xiang Dong, Hang Huang, Haixia Xu, Peninah Cheptoo Rono, Xiuzhen Cai and Guangwan Hu Tags: Research Source Type: research
Mining key circRNA-associated-ceRNA networks for milk fat metabolism in cows with varying milk fat percentages
Cow milk fat is an essential indicator for evaluating and measuring milk quality and cow performance. Growing research has identified the molecular functions of circular RNAs (circRNAs) necessary for mammary g... (Source: BMC Genomics)
Source: BMC Genomics - April 1, 2024 Category: Genetics & Stem Cells Authors: Xiaofang Feng, Lijia Tong, Lina Ma, Tong Mu, Baojun Yu, Ruoshuang Ma, Jiwei Li, Chuanchuan Wang, Juan Zhang and Yaling Gu Tags: Research Source Type: research
Detection and classification of the integrative conjugative elements of Lactococcus lactis
Lactococcus lactis is widely applied by the dairy industry for the fermentation of milk into products such as cheese. Adaptation of L. lactis to the dairy environment often depends on functions encoded by mobile... (Source: BMC Genomics)
Source: BMC Genomics - April 1, 2024 Category: Genetics & Stem Cells Authors: Simon van der Els, Reshtrie Sheombarsing, Thijn van Kempen, Michiel Wels, Jos Boekhorst, Peter A. Bron and Michiel Kleerebezem Tags: Research Source Type: research
MicroRNA-542-3p targets Pten to inhibit the myoblasts proliferation but suppresses myogenic differentiation independent of targeted Pten
Non-coding RNA is a key epigenetic regulation factor during skeletal muscle development and postnatal growth, and miR-542-3p was reported to be conserved and highly expressed in the skeletal muscle among diffe... (Source: BMC Genomics)
Source: BMC Genomics - April 1, 2024 Category: Genetics & Stem Cells Authors: Dandan Li, Yongqi Yue, Xinxin Feng, Weibing Lv, Yilin Fan, Peiran Sha, Te Zhao, Yaqiu Lin, Xianrong Xiong, Jian Li and Yan Xiong Tags: Research Source Type: research
Mechanism of action of microRNA166 on nitric oxide in alfalfa (Medicago sativa L.) under drought stress
Alfalfa is a perennial forage crop of high importance, but its cultivation is often affected by drought stress. Currently, the investigation of drought-related small RNAs is a popular research topic to uncover... (Source: BMC Genomics)
Source: BMC Genomics - March 28, 2024 Category: Genetics & Stem Cells Authors: Bochuang Wei, Yizhen Wang, Qian Ruan, Xiaolin Zhu, Xian Wang, Tianjie Wang, Ying Zhao and Xiaohong Wei Tags: Research Source Type: research
Comparative genomic analysis of the Growth-Regulating Factors-Interacting Factors (GIFs) in six Salicaceae species and functional analysis of PeGIF3 reveals their regulatory role in Populus heteromorphic leaves
The growth-regulating factor-interacting factor (GIF) gene family plays a vital role in regulating plant growth and development, particularly in controlling leaf, seed, and root meristem homeostasis. However, the... (Source: BMC Genomics)
Source: BMC Genomics - March 28, 2024 Category: Genetics & Stem Cells Authors: Yuqi Yang, Jianhao Sun, Chen Qiu, Peipei Jiao, Houling Wang, Zhihua Wu and Zhijun Li Tags: Research Source Type: research
Comparison of structural variant callers for massive whole-genome sequence data
Detecting structural variations (SVs) at the population level using next-generation sequencing (NGS) requires substantial computational resources and processing time. Here, we compared the performances of 11 S... (Source: BMC Genomics)
Source: BMC Genomics - March 28, 2024 Category: Genetics & Stem Cells Authors: Soobok Joe, Jong-Lyul Park, Jun Kim, Sangok Kim, Ji-Hwan Park, Min-Kyung Yeo, Dongyoon Lee, Jin Ok Yang and Seon-Young Kim Tags: Research Source Type: research
Machine learning to establish three sphingolipid metabolism genes signature to characterize the immune landscape and prognosis of patients with gastric cancer
This study used multi omics data to explor... (Source: BMC Genomics)
Source: BMC Genomics - March 28, 2024 Category: Genetics & Stem Cells Authors: Jianing Yan, Xuan Yu, Qier Li, Min Miao and Yongfu Shao Tags: Research Source Type: research
