Microbial trend analysis for common dynamic trend, group comparison, and classification in longitudinal microbiome study
The human microbiome is inherently dynamic and its dynamic nature plays a critical role in maintaining health and driving disease. With an increasing number of longitudinal microbiome studies, scientists are e... (Source: BMC Genomics)
Source: BMC Genomics - September 15, 2021 Category: Genetics & Stem Cells Authors: Chan Wang, Jiyuan Hu, Martin J. Blaser and Huilin Li Tags: Methodology article Source Type: research

Brain-derived neurotrophic factor gene variants and obesity in former smokers
From genome-wide association studies, brain-derived neurotrophic factor (BDNF) locus on chromosome 11 was the only SNP associated with both smoking and body mass index (BMI) in European, African and Asian populat... (Source: BMC Genomics)
Source: BMC Genomics - September 15, 2021 Category: Genetics & Stem Cells Authors: Shan-shan Yang, Yao He, Lin Xu, Yali Jin, Wei-sen Zhang, Chao-qiang Jiang, Kar Keung Cheng and Tai Hing Lam Tags: Research Source Type: research

Genome collinearity analysis illuminates the evolution of donkey chromosome 1 and horse chromosome 5 in perissodactyls: A comparative study
It is important to resolve the evolutionary history of species genomes as it has affected both genome organization and chromosomal architecture. The rapid innovation in sequencing technologies and the improvem... (Source: BMC Genomics)
Source: BMC Genomics - September 15, 2021 Category: Genetics & Stem Cells Authors: Shaohua Li, Gaoping Zhao, Hongmei Han, Yunxia Li, Jun Li, Jinfeng Wang, Guifang Cao and Xihe Li Tags: Research Source Type: research

Correction to: Post-diapause transcriptomic restarts: insight from a high-latitude copepod
(Source: BMC Genomics)
Source: BMC Genomics - September 14, 2021 Category: Genetics & Stem Cells Authors: Vittoria Roncalli, Matthew C. Cieslak, Ann M. Castelfranco, Russell R. Hopcroft, Daniel K. Hartline and Petra H. Lenz Tags: Correction Source Type: research

Dual RNA-seq transcriptome analysis of caecal tissue during primary Eimeria tenella infection in chickens
Coccidiosis is an infectious disease with large negative impact on the poultry industry worldwide. It is an enteric infection caused by unicellular Apicomplexan parasites of the genus Eimeria. The present study a... (Source: BMC Genomics)
Source: BMC Genomics - September 14, 2021 Category: Genetics & Stem Cells Authors: Arnar K. S. Sandholt, Eva Wattrang, Tobias Lilja, Harri Ahola, Anna Lund én, Karin Troell, Staffan G. Svärd and Robert Söderlund Tags: Research Source Type: research

Choice of pre-processing pipeline influences clustering quality of scRNA-seq datasets
Single-cell RNA sequencing (scRNA-seq) has quickly become one of the most dominant techniques in modern transcriptome assessment. In particular, 10X Genomics ’ Chromium system, with its high throughput approach... (Source: BMC Genomics)
Source: BMC Genomics - September 14, 2021 Category: Genetics & Stem Cells Authors: Inbal Shainer and Manuel Stemmer Tags: Methodology article Source Type: research

PathFams: statistical detection of pathogen-associated protein domains
A substantial fraction of genes identified within bacterial genomes encode proteins of unknown function. Identifying which of these proteins represent potential virulence factors, and mapping their key virulen... (Source: BMC Genomics)
Source: BMC Genomics - September 14, 2021 Category: Genetics & Stem Cells Authors: Briallen Lobb, Benjamin Jean-Marie Tremblay, Gabriel Moreno-Hagelsieb and Andrew C. Doxey Tags: Research Source Type: research

Genome-wide association study reveals the genetic architecture of root hair length in maize
Root hair, a special type of tubular-shaped cell, outgrows from root epidermal cell and plays important roles in the acquisition of nutrients and water, as well as interactions with biotic and abiotic stress. ... (Source: BMC Genomics)
Source: BMC Genomics - September 14, 2021 Category: Genetics & Stem Cells Authors: Lin Liu, Lu-Guang Jiang, Jin-Hong Luo, Ai-Ai Xia, Li-Qun Chen and Yan He Tags: Research Source Type: research

Complete genome sequence and identification of polyunsaturated fatty acid biosynthesis genes of the myxobacterium Minicystis rosea DSM 24000T
Myxobacteria harbor numerous biosynthetic gene clusters that can produce a diverse range of secondary metabolites. Minicystis rosea DSM 24000T is a soil-dwelling myxobacterium belonging to the suborderSorangiinea... (Source: BMC Genomics)
Source: BMC Genomics - September 13, 2021 Category: Genetics & Stem Cells Authors: Shilpee Pal, Gaurav Sharma and Srikrishna Subramanian Tags: Research Source Type: research

Correction to: Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) Study
(Source: BMC Genomics)
Source: BMC Genomics - September 13, 2021 Category: Genetics & Stem Cells Authors: Yao Hu, Stephanie A. Bien, Katherine K. Nishimura, Jeffrey Haessler, Chani J. Hodonsky, Antoine R. Baldassari, Heather M. Highland, Zhe Wang, Michael Preuss, Colleen M. Sitlani, Genevieve L. Wojcik, Ran Tao, Mariaelisa Graff, Laura M. Huckins, Quan Sun, M Tags: Correction Source Type: research

Correction to: Genome-wide development of insertiondeletion (InDel) markers for Cannabis and its uses in genetic structure analysis of Chinese germplasm and sex-linked marker identification
(Source: BMC Genomics)
Source: BMC Genomics - September 13, 2021 Category: Genetics & Stem Cells Authors: Gen Pan, Zheng Li, Siqi Huang, Jie Tao, Yaliang Shi, Anguo Chen, Jianjun Li, Huijuan Tang, Li Chang, Yong Deng, Defang Li and Lining Zhao Tags: Correction Source Type: research

Gene co-expression network analysis in zebrafish reveals chemical class specific modules
Zebrafish is a popular animal model used for high-throughput screening of chemical hazards, however, investigations of transcriptomic mechanisms of toxicity are still needed. Here, our goal was to identify gen... (Source: BMC Genomics)
Source: BMC Genomics - September 13, 2021 Category: Genetics & Stem Cells Authors: Prarthana Shankar, Ryan S. McClure, Katrina M. Waters and Robyn L. Tanguay Tags: Research Source Type: research

Integrated analysis of lncRNA and mRNA in liver of Megalobrama amblycephala post Aeromonas hydrophila infection
As non-coding RNA molecules of more than 200  bp in length, long non-coding RNAs (lncRNAs) play a variety of roles in biological processes, including regulating the immune responses to bacterial infections. In ... (Source: BMC Genomics)
Source: BMC Genomics - September 11, 2021 Category: Genetics & Stem Cells Authors: Qianhui Sun, Jixiu Wang, Guowen Wang, Huanling Wang and Hong Liu Tags: Research Source Type: research

Morphological characteristics and transcriptome analysis at different anther development stages of the male sterile mutant MS7 –2 in Wucai (Brassica campestris L.)
The discovery of male sterile materials is of great significance for the development of plant fertility research. Wucai (Brassica campestris L. ssp. chinensis var. rosularis Tsen) is a variety of non-heading Chin... (Source: BMC Genomics)
Source: BMC Genomics - September 11, 2021 Category: Genetics & Stem Cells Authors: Jian Wang, Yitao Yang, Lei Zhang, Shaoxing Wang, Lingyun Yuan, Guohu Chen, Xiaoyan Tang, Jinfeng Hou, Shidong Zhu and Chenggang Wang Tags: Research Source Type: research

Genome-resolved metagenome and metatranscriptome analyses of thermophilic composting reveal key bacterial players and their metabolic interactions
Composting is an important technique for environment-friendly degradation of organic material, and is a microbe-driven process. Previous metagenomic studies of composting have presented a general description o... (Source: BMC Genomics)
Source: BMC Genomics - September 10, 2021 Category: Genetics & Stem Cells Authors: Lucas Palma Perez Braga, Roberta Verciano Pereira, Layla Farage Martins, Livia Maria Silva Moura, Fabio Beltrame Sanchez, Jos é Salvatore Leister Patané, Aline Maria da Silva and João Carlos Setubal Tags: Research Source Type: research

Correction to: epidemiological and genomic characteristics of A. baumannii from different infection sites using comparative genomics
(Source: BMC Genomics)
Source: BMC Genomics - September 8, 2021 Category: Genetics & Stem Cells Authors: Xingchen Bian, Xiaofen Liu, Xuefei Zhang, Xin Li, Jing Zhang, Huajun Zheng, Sichao Song, Xiang Li and Meiqing Feng Tags: Correction Source Type: research

Transcriptome analysis reveals the molecular mechanisms of heterosis on thermal resistance in hybrid abalone
Heterosis has been exploited for decades in different animals and crops due to it resulting in dramatic increases in yield and adaptability. Hybridization is a classical breeding method that can effectively im... (Source: BMC Genomics)
Source: BMC Genomics - September 8, 2021 Category: Genetics & Stem Cells Authors: Qizhen Xiao, Zekun Huang, Yawei Shen, Yang Gan, Yi Wang, Shihai Gong, Yisha Lu, Xuan Luo, Weiwei You and Caihuan Ke Tags: Research Source Type: research

The chloroplast genome of Amygdalus L. (Rosaceae) reveals the phylogenetic relationship and divergence time
This study reported complete chloroplast (cp) genom... (Source: BMC Genomics)
Source: BMC Genomics - September 7, 2021 Category: Genetics & Stem Cells Authors: Zhongyu Du, Ke Lu, Kai Zhang, Yiming He, Haitao Wang, Guaiqiang Chai, Jianguo Shi and Yizhong Duan Tags: Research Source Type: research

Comparative analysis of the complete mitochondrial genome sequences and anther development cytology between maintainer and Ogura-type cytoplasm male-sterile cabbage (B. oleracea Var. capitata)
Cytoplasmic male sterility (CMS) has been widely used for commercial F1 hybrid seeds production. CMS is primarily caused by chimeric genes in mitochondrial genomes. However, which specific stages of anther dev... (Source: BMC Genomics)
Source: BMC Genomics - September 7, 2021 Category: Genetics & Stem Cells Authors: Xionghui Zhong, Denghui Chen, Jian Cui, Hailong Li, Yuxin Huang and Jungen Kang Tags: Research Source Type: research

A tetraploidization event shaped the Aquilaria sinensis genome and contributed to the ability of sesquiterpenes synthesis
Agarwood, generated from the Aquilaria sinensis, has high economic and medicinal value. Although its genome has been sequenced, the ploidy of A. sinensis paleopolyploid remains unclear. Moreover, the expression c... (Source: BMC Genomics)
Source: BMC Genomics - September 7, 2021 Category: Genetics & Stem Cells Authors: Fanbo Meng, Tianzhe Chu, Qiang Tang and Wei Chen Tags: Research Source Type: research

Redox proteomic study of Bacillus cereus thiol proteome during fermentative anaerobic growth
Bacillus cereus is a notorious foodborne pathogen, which can grow under anoxic conditions. Anoxic growth is supported by endogenous redox metabolism, for which the thiol redox proteome serves as an interface. Her... (Source: BMC Genomics)
Source: BMC Genomics - September 7, 2021 Category: Genetics & Stem Cells Authors: Fella Hamitouche, Jean-Charles Gaillard, Philippe Schmitt, Jean Armengaud, Catherine Duport and Luc Dedieu Tags: Research Source Type: research

High contiguity de novo genome assembly and DNA modification analyses for the fungus fly, Sciara coprophila, using single-molecule sequencing
The lower Dipteran fungus fly, Sciara coprophila, has many unique biological features that challenge the rule of genome DNA constancy. For example, Sciara undergoes paternal chromosome elimination and maternal X ... (Source: BMC Genomics)
Source: BMC Genomics - September 6, 2021 Category: Genetics & Stem Cells Authors: John M. Urban, Michael S. Foulk, Jacob E. Bliss, C. Michelle Coleman, Nanyan Lu, Reza Mazloom, Susan J. Brown, Allan C. Spradling and Susan A. Gerbi Tags: Research article Source Type: research

Inter-chromosomal k-mer distances
Inversion Symmetry is a generalization of the second Chargaff rule, stating that the count of a string of k nucleotides on a single chromosomal strand equals the count of its inverse (reverse-complement) k-mer... (Source: BMC Genomics)
Source: BMC Genomics - September 6, 2021 Category: Genetics & Stem Cells Authors: Alon Kafri, Benny Chor and David Horn Tags: Research Source Type: research

C-terminal domain phosphatase-like 1 (CPL1) is involved in floral transition in Arabidopsis
RNA polymerase II plays critical roles in transcription in eukaryotic organisms. C-terminal Domain Phosphatase-like 1 (CPL1) regulates the phosphorylation state of the C-terminal domain of RNA polymerase II su... (Source: BMC Genomics)
Source: BMC Genomics - September 5, 2021 Category: Genetics & Stem Cells Authors: Chen Yuan, Jingya Xu, Qianqian Chen, Qinggang Liu, Yikai Hu, Yicheng Jin and Cheng Qin Tags: Research Source Type: research

Integrative lncRNA landscape reveals lncRNA-coding gene networks in the secondary cell wall biosynthesis pathway of moso bamboo (Phyllostachys edulis)
LncRNAs are extensively involved in plant biological processes. However, the lack of a comprehensive lncRNA landscape in moso bamboo has hindered the molecular study of lncRNAs. Moreover, the role of lncRNAs i... (Source: BMC Genomics)
Source: BMC Genomics - September 4, 2021 Category: Genetics & Stem Cells Authors: Jiongliang Wang, Yinguang Hou, Yu Wang and Hansheng Zhao Tags: Research Source Type: research

Up-regulation of apoptotic- and cell survival-related gene pathways following exposures of western corn rootworm to B. thuringiensis crystalline pesticidal proteins in transgenic maize roots
Resistance of pest insect species to insecticides, including B. thuringiensis (Bt) pesticidal proteins expressed by transgenic plants, is a threat to global food security. Despite the western corn rootworm, Diabr... (Source: BMC Genomics)
Source: BMC Genomics - September 4, 2021 Category: Genetics & Stem Cells Authors: Brad S. Coates, Emeline Deleury, Aaron J. Gassmann, Bruce E. Hibbard, Lance J. Meinke, Nicholas J. Miller, Jennifer Petzold-Maxwell, B. Wade French, Thomas W. Sappington, Blair D. Siegfried and Thomas Guillemaud Tags: Research Source Type: research

Proteome analysis identified proteins associated with mitochondrial function and inflammation activation crucially regulating the pathogenesis of fatty liver disease
Fatty liver disease prevalently occurs in commercial postpartum dairies, resulting in a worldwide high culling rate because of their subsequent limitations of production and reproduction performance. (Source: BMC Genomics)
Source: BMC Genomics - September 4, 2021 Category: Genetics & Stem Cells Authors: Letian Zhang, Tingjun Liu, Chengzhang Hu, Xuan Zhang, Qin Zhang and Kerong Shi Tags: Research Source Type: research

Ischemic stroke induces cardiac dysfunction and alters transcriptome profile in mice
Stroke can induce cardiac dysfunction in the absence of primary cardiac disease; however, the mechanisms underlying the interaction between the neurological deficits and the heart are poorly understood. The ob... (Source: BMC Genomics)
Source: BMC Genomics - September 4, 2021 Category: Genetics & Stem Cells Authors: Jie Chen, Jiahong Gong, Haili Chen, Xuqing Li, Li Wang, Xiaoli Qian, Kecheng Zhou, Ting Wang, Songhe Jiang, Lei Li and Shengcun Li Tags: Research Source Type: research

Transcriptome analysis provides genome annotation and expression profiles in the central nervous system of Lymnaea stagnalis at different ages
The pond snail, Lymnaea stagnalis (L. stagnalis), has served as a valuable model organism for neurobiology studies due to its simple and easily accessible central nervous system (CNS). L. stagnalis has been widel... (Source: BMC Genomics)
Source: BMC Genomics - September 3, 2021 Category: Genetics & Stem Cells Authors: Martina Rosato, Brittany Hoelscher, Zhenguo Lin, Chidera Agwu and Fenglian Xu Tags: Research Source Type: research

Genome-wide association studies for canine hip dysplasia in single and multiple populations – implications and potential novel risk loci
Association mapping studies of quantitative trait loci (QTL) for canine hip dysplasia (CHD) can contribute to the understanding of the genetic background of this common and debilitating disease and might contr... (Source: BMC Genomics)
Source: BMC Genomics - September 2, 2021 Category: Genetics & Stem Cells Authors: Shizhi Wang, Erling Strandberg, Per Arvelius, Dylan N. Clements, Pamela Wiener and Juliane Friedrich Tags: Research Source Type: research

Distribution and diversity of dimetal-carboxylate halogenases in cyanobacteria
Halogenation is a recurring feature in natural products, especially those from marine organisms. The selectivity with which halogenating enzymes act on their substrates renders halogenases interesting targets ... (Source: BMC Genomics)
Source: BMC Genomics - August 31, 2021 Category: Genetics & Stem Cells Authors: Nadia Eusebio, Adriana Rego, Nathaniel R. Glasser, Raquel Castelo-Branco, Emily P. Balskus and Pedro N. Le ão Tags: Research Source Type: research

Altered synthesis of genes associated with short-chain fatty acids in the gut of patients with atrial fibrillation
The gut microbiota provides health benefits in humans by producing short-chain fatty acids (SCFAs), whose deficiency causes multiple disorders and inflammatory diseases. However, gut bacteria producing SCFAs i... (Source: BMC Genomics)
Source: BMC Genomics - August 31, 2021 Category: Genetics & Stem Cells Authors: Jing Zhang, Kun Zuo, Chen Fang, Xiandong Yin, Xiaoqing Liu, Jiuchang Zhong, Kuibao Li, Jing Li, Li Xu and Xinchun Yang Tags: Research Source Type: research

The genome of the extremophile Artemia provides insight into strategies to cope with extreme environments
This study aims to elucidate its strategies to cope with these stressors. (Source: BMC Genomics)
Source: BMC Genomics - August 31, 2021 Category: Genetics & Stem Cells Authors: Stephanie De Vos, Stephane Rombauts, Louis Coussement, Wannes Dermauw, Marnik Vuylsteke, Patrick Sorgeloos, James S. Clegg, Ziro Nambu, Filip Van Nieuwerburgh, Parisa Norouzitallab, Thomas Van Leeuwen, Tim De Meyer, Gilbert Van Stappen, Yves Van de Peer a Tags: Research Source Type: research

Genome-wide association study for deoxynivalenol production and aggressiveness in wheat and rye head blight by resequencing 92 isolates of Fusarium culmorum
Fusarium culmorum is an important pathogen causing head blight of cereals in Europe. This disease is of worldwide importance leading to reduced yield, grain quality, and contamination by mycotoxins. These mycotox... (Source: BMC Genomics)
Source: BMC Genomics - August 30, 2021 Category: Genetics & Stem Cells Authors: Thomas Miedaner, Andrea Vasquez, Valheria Castiblanco, Hilda Elena Castillo, Nora Foroud, Tobias W ürschum and Willmar Leiser Tags: Research article Source Type: research

Genome-wide identification, characterization and expression analysis of MATE family genes in apple (Malus × domestica Borkh)
As an important group of the multidrug efflux transporter family, the multidrug and toxic compound extrusion (MATE) family has a wide range of functions and is distributed in all kingdoms of living organisms. ... (Source: BMC Genomics)
Source: BMC Genomics - August 30, 2021 Category: Genetics & Stem Cells Authors: Weihan Zhang, Liao Liao, Jinsheng Xu, Yuepeng Han and Li Li Tags: Research article Source Type: research

Comparative genomic analysis of a naturally born serpentized pig reveals putative mutations related to limb and bone development
It is believed that natural selection acts on the phenotypical changes caused by mutations. Phenotypically, from fishes to amphibians to reptiles, the emergence of limbs greatly facilitates the landing of anci... (Source: BMC Genomics)
Source: BMC Genomics - August 28, 2021 Category: Genetics & Stem Cells Authors: Yankai Jiang, Xinyue Cao and Haibin Wang Tags: Research article Source Type: research

Correction to: Genome wide effects of oleic acid on cultured bovine granulosa cells: evidence for the activation of pathways favoring folliculo-luteal transition
(Source: BMC Genomics)
Source: BMC Genomics - August 24, 2021 Category: Genetics & Stem Cells Authors: Vengala Rao Yenuganti, Dirk Koczan and Jens Vanselow Tags: Correction Source Type: research

A graphical, interactive and GPU-enabled workflow to process long-read sequencing data
Long-read sequencing has great promise in enabling portable, rapid molecular-assisted cancer diagnoses. A key challenge in democratizing long-read sequencing technology in the biomedical and clinical community... (Source: BMC Genomics)
Source: BMC Genomics - August 23, 2021 Category: Genetics & Stem Cells Authors: Shishir Reddy, Ling-Hong Hung, Olga Sala-Torra, Jerald P. Radich, Cecilia CS Yeung and Ka Yee Yeung Tags: Software Source Type: research

Whole genome sequence based capsular typing and antimicrobial resistance prediction of Group B streptococcal isolates from colonized pregnant women in Nigeria
Streptococcus agalactiae (Group B Streptococcus, GBS) is one of the major bacterial pathogens responsible for neonatal sepsis. Whole genome sequencing has, in recent years, emerged as a reliable tool for capsular... (Source: BMC Genomics)
Source: BMC Genomics - August 23, 2021 Category: Genetics & Stem Cells Authors: Mienye Bob-Manuel, Lesley McGee, Jeremiah A Igunma, Mary A Alex-Wele, Orikomaba K Obunge and Kennedy T Wariso Tags: Research Source Type: research

Facilitating population genomics of non-model organisms through optimized experimental design for reduced representation sequencing
Genome-wide data are invaluable to characterize differentiation and adaptation of natural populations. Reduced representation sequencing (RRS) subsamples a genome repeatedly across many individuals. However, R... (Source: BMC Genomics)
Source: BMC Genomics - August 21, 2021 Category: Genetics & Stem Cells Authors: Henrik Christiansen, Franz M. Heindler, Bart Hellemans, Quentin Jossart, Francesca Pasotti, Henri Robert, Marie Verheye, Bruno Danis, Marc Kochzius, Frederik Leliaert, Camille Moreau, Tasnim Patel, Anton P. Van de Putte, Ann Vanreusel, Filip A. M. Volckae Tags: Research Source Type: research

CeTF: an R/Bioconductor package for transcription factor co-expression networks using regulatory impact factors (RIF) and partial correlation and information (PCIT) analysis
Finding meaningful gene-gene interaction and the main Transcription Factors (TFs) in co-expression networks is one of the most important challenges in gene expression data mining. (Source: BMC Genomics)
Source: BMC Genomics - August 20, 2021 Category: Genetics & Stem Cells Authors: Carlos Alberto Oliveira de Biagi Jr, Ricardo Perecin Nociti, Danielle Barbosa Brotto, Breno Osvaldo Funicheli, Patr ícia de Cássia Ruy, João Paulo Bianchi Ximenez, David Livingstone Alves Figueiredo and Wilson Araújo Silva Jr Tags: Software Source Type: research

Genome-wide analysis of R2R3-MYB transcription factors family in the autopolyploid Saccharum spontaneum: an exploration of dominance expression and stress response
Sugarcane (Saccharum) is the most critical sugar crop worldwide. As one of the most enriched transcription factor families in plants, MYB genes display a great potential to contribute to sugarcane improvement by ... (Source: BMC Genomics)
Source: BMC Genomics - August 18, 2021 Category: Genetics & Stem Cells Authors: Yuan Yuan, Xiping Yang, Mengfan Feng, Hongyan Ding, Muhammad Tahir Khan, Jisen Zhang and Muqing Zhang Tags: Research Source Type: research

First core microsatellite panel identification in Apennine brown bears (Ursus arctos marsicanus): a collaborative approach
The low cost and rapidity of microsatellite analysis have led to the development of several markers for many species. Because in non-invasive genetics it is recommended to genotype individuals using few loci, ... (Source: BMC Genomics)
Source: BMC Genomics - August 18, 2021 Category: Genetics & Stem Cells Authors: Erminia Scarpulla, Alessio Boattini, Mario Cozzo, Patrizia Giangregorio, Paolo Ciucci, Nadia Mucci, Ettore Randi and Francesca Davoli Tags: Methodology article Source Type: research

Dysregulated long noncoding RNAs in the brainstem of the DBA/1 mouse model of SUDEP
This study aimed to investigate differentially expressed lncRNAs and messenger RNAs (mRNAs) in the susceptibility gaining pro... (Source: BMC Genomics)
Source: BMC Genomics - August 17, 2021 Category: Genetics & Stem Cells Authors: Deng Chen, Lina Zhu, Xin Lin, Dong Zhou and Ling Liu Tags: Research article Source Type: research

Experimental Babesia rossi infection induces hemolytic, metabolic, and viral response pathways in the canine host
Babesia rossi is a leading cause of morbidity and mortality among the canine population of sub-Saharan Africa, but pathogenesis remains poorly understood. Previous studies of B. rossi infection were derived from ... (Source: BMC Genomics)
Source: BMC Genomics - August 16, 2021 Category: Genetics & Stem Cells Authors: Rachel L. Smith, Amelia Goddard, Arun Boddapati, Steven Brooks, Johan P. Schoeman, Justin Lack, Andrew Leisewitz and Hans Ackerman Tags: Research Source Type: research

Transcriptomic analysis to elucidate the effects of high stocking density on grass carp (Ctenopharyngodon idella)
Grass carp (Ctenopharyngodon idella) is one of the most widely cultivated fishes in China. High stocking density can reportedly affect fish growth and immunity. Herein we performed PacBio long-read single-molecul... (Source: BMC Genomics)
Source: BMC Genomics - August 16, 2021 Category: Genetics & Stem Cells Authors: Yan He, Hongyan Yu, Honggang Zhao, Hua Zhu, Qingjing Zhang, Anqi Wang, Yubang Shen, Xiaoyan Xu and Jiale Li Tags: Research Source Type: research

Expanding the potential genes of inborn errors of immunity through protein interactions
Inborn errors of immunity (IEI) are a group of genetic disorders that impair the immune system, with over 400 genes described so far, and hundreds more to be discovered. To facilitate the search for new genes,... (Source: BMC Genomics)
Source: BMC Genomics - August 15, 2021 Category: Genetics & Stem Cells Authors: Humza A. Khan and Manish J. Butte Tags: Research Source Type: research

Genome analyses of four Wolbachia strains and associated mitochondria of Rhagoletis cerasi expose cumulative modularity of cytoplasmic incompatibility factors and cytoplasmic hitchhiking across host populations
The endosymbiont Wolbachia can manipulate arthropod reproduction and invade host populations by inducing cytoplasmic incompatibility (CI). Some host species are coinfected with multiple Wolbachia strains which ma... (Source: BMC Genomics)
Source: BMC Genomics - August 13, 2021 Category: Genetics & Stem Cells Authors: Jennifer L. Morrow and Markus Riegler Tags: Research Source Type: research

Transcriptome sequencing and differential expression analysis of seed starch accumulation in Chinese chestnut Metaxenia
Chestnut seeds are important kinds of edible nuts rich in starch and protein. The characteristics and nutrient contents of chestnut have been found to show obvious metaxenia effects in previous studies. To imp... (Source: BMC Genomics)
Source: BMC Genomics - August 13, 2021 Category: Genetics & Stem Cells Authors: Shengxing Li, Zhuogong Shi, Qiurong Zhu, Liang Tao, Wenhui Liang and Zhiheng Zhao Tags: Research article Source Type: research

Comparative ribosome profiling reveals distinct translational landscapes of salt-sensitive and -tolerant rice
Soil salinization represents a serious threat to global rice production. Although significant research has been conducted to understand salt stress at the genomic, transcriptomic and proteomic levels, few stud... (Source: BMC Genomics)
Source: BMC Genomics - August 12, 2021 Category: Genetics & Stem Cells Authors: Xiaoyu Yang, Bo Song, Jie Cui, Lina Wang, Shuoshuo Wang, Linlin Luo, Lei Gao, Beixin Mo, Yu Yu and Lin Liu Tags: Research article Source Type: research