Genes, Vol. 9, Pages 245: Transcription Factor Binding Site Enrichment Analysis in Co-Expression Modules in Celiac Disease
Genes, Vol. 9, Pages 245: Transcription Factor Binding Site Enrichment Analysis in Co-Expression Modules in Celiac Disease
Genes doi: 10.3390/genes9050245
Authors:
Irati Romero-Garmendia
Koldo Garcia-Etxebarria
Hector Hernandez-Vargas
Izortze Santin
Amaia Jauregi-Miguel
Leticia Plaza-Izurieta
Marie-Pierre Cros
Maria Legarda
Iñaki Irastorza
Zdenko Herceg
Nora Fernandez-Jimenez
Jose Ramon Bilbao
The aim of this study was to construct celiac co-expression patterns at a whole genome level and to identify transcription factors (TFs) that could drive the gliadin-related changes in coordination of gene expression observed in celiac disease (CD). Differential co-expression modules were identified in the acute and chronic responses to gliadin using expression data from a previous microarray study in duodenal biopsies. Transcription factor binding site (TFBS) and Gene Ontology (GO) annotation enrichment analyses were performed in differentially co-expressed genes (DCGs) and selection of candidate regulators was performed. Expression of candidates was measured in clinical samples and the activation of the TFs was further characterized in C2BBe1 cells upon gliadin challenge. Enrichment analyses of the DCGs identified 10 TFs and five were selected for further investigation. Expression changes related to active CD were detected in four TFs, as well as in several of their in silico predicted targets. The activation of TFs was further characterized in C2BBe1 ce...
Source: Genes - Category: Genetics & Stem Cells Authors: Irati Romero-Garmendia Koldo Garcia-Etxebarria Hector Hernandez-Vargas Izortze Santin Amaia Jauregi-Miguel Leticia Plaza-Izurieta Marie-Pierre Cros Maria Legarda I ñaki Irastorza Zdenko Herceg Nora Fernandez-Jimenez Jose Ramon Bilbao Tags: Article Source Type: research