OSG-GEM: Gene Expression Matrix Construction Using the Open Science Grid.

We describe the usage of the workflow (OSG-GEM), discuss workflow design, inspect performance data, and assess accuracy in mapping paired-end sequencing reads to a reference genome. A target OSG-GEM user is proficient with the Linux command line and possesses basic bioinformatics experience. The user may run this workflow directly on the OSG or adapt it to novel computing environments. PMID: 27499617 [PubMed]

http://www.ncbi.nlm.nih.gov/pubmed/27499617?dopt=Abstract

Source: Bioinformatics and Biology Insights - August 10, 2016 Category: Bioinformatics Authors: Poehlman WL, Rynge M, Branton C, Balamurugan D, Feltus FA Tags: Bioinform Biol Insights Source Type: research