An optimized genomic VCF workflow for precise identification of Mycobacterium tuberculosis cluster from cross-platform whole genome sequencing data.

In this study, we suggest that the GVCF workflow showed the best performing variant caller to avoid cross-platform pairwise SNP differences.
PMID: 31881359 [PubMed - as supplied by publisher]

Source: Infection, Genetics and Evolution - December 23, 2019 Category: Genetics & Stem Cells Authors: Disratthakit A, Toyo-Oka L, Thawong P, Paiboonsiri P, Wichukjinda N, Ajawatanawong P, Thipkrua N, Suthum K, Palittapongarnpim P, Tokunaga K, Mahasirimongkol S Tags: Infect Genet Evol Source Type: research