Distribution patterns and functional diversity of DNA viruses determined by ecological niches in huge river ecosystems

Virology. 2024 Feb 11;593:110015. doi: 10.1016/j.virol.2024.110015. Online ahead of print.ABSTRACTWhile the vast number of DNA and RNA viruses participate in biogeochemical cycles in natural systems, little is known about virome in river ecosystems. Here, we analyzed the DNA viral composition and its metabolic potential in the Yangtze River, including freshwater (FW) and freshwater sediments (FWS). A total of 1237 river-derived virus contigs (RVCs) were obtained following de novo assembly from 62 metagenomics. We found that the viral diversity is significantly positively correlated longitudinally. Moreover, FW exhibited a greater viral variety and significantly different composition than FWS. The viral co-occurrence network suggested that positive correlations predominate between RVCs. Lastly, 1657 viral functions were predicted by gene ontology. Notably, 96 of 150 RVCs with higher weights identified by random-forest classier were more abundant in FW, which most engage organic cyclic compound metabolic processes and hydrolase activity. Together, this study highlights the previously unrecognized viruses and the importance of their distributions and functions in major river systems.PMID:38359578 | DOI:10.1016/j.virol.2024.110015

Source: Virology - February 15, 2024 Category: Virology Authors: Kang Zhou Hui Zhou Source Type: research