Orchestrating seed storage protein and starch accumulation toward overcoming yield-quality trade-off in cereal crops
J Integr Plant Biol. 2024 Feb 26. doi: 10.1111/jipb.13633. Online ahead of print.ABSTRACTAchieving high yield and good quality in crops is essential for human food security and health. However, there is usually disharmony between yield and quality. Seed storage protein (SSP) and starch, the predominant components in cereal grains, determine yield and quality, and their coupled synthesis causes a yield-quality trade-off. Therefore, dissection of the underlying regulatory mechanism facilitates simultaneous improvement of yield and quality. Here, we summarize current findings about the synergistic molecular machinery underpin...
Source: Journal of Integrative Plant Biology - February 27, 2024 Category: Biology Authors: Shuanghe Cao Bingyan Liu Daowen Wang Awais Rasheed Lina Xie Xianchun Xia Zhonghu He Source Type: research

Structural insights into the Oryza sativa cation transporters HKTs in salt tolerance
In this study, we elucidate the structures of OsHKT1;1 and OsHKT2;1, representing two distinct classes of rice HKTs. The dimeric assembled OsHKTs can be structurally divided into four domains. At the dimer interface, a half-helix or a loop in the third domain is coordinated by the C-terminal region of the opposite subunit. Additionally, we present the structures of OsHKT1;5 salt-tolerant and salt-sensitive variants, a key quantitative trait locus associated with salt tolerance. The salt-tolerant variant of OsHKT1;5 exhibits enhanced Na+ transport capability and displays a more flexible conformation. These findings shed lig...
Source: Journal of Integrative Plant Biology - February 27, 2024 Category: Biology Authors: Ran Gao Yutian Jia Xia Xu Peng Fu Jiaqi Zhou Guanghui Yang Source Type: research

Structural insights into the unusual core photocomplex from a triply extremophilic purple bacterium, Halorhodospira halochloris
J Integr Plant Biol. 2024 Feb 27. doi: 10.1111/jipb.13628. Online ahead of print.ABSTRACTHalorhodospira (Hlr.) halochloris is a triply extremophilic phototrophic purple sulfur bacterium, as it is thermophilic, alkaliphilic, and extremely halophilic. The light-harvesting-reaction center (LH1-RC) core complex of this bacterium displays an LH1-Qy transition at 1,016 nm, which is the lowest-energy wavelength absorption among all known phototrophs. Here we report the cryo-EM structure of the LH1-RC at 2.42 Å resolution. The LH1 complex forms a tricyclic ring structure composed of 16 αβγ-polypeptides and one αβ-heterodimer...
Source: Journal of Integrative Plant Biology - February 27, 2024 Category: Biology Authors: Chen-Hui Qi Guang-Lei Wang Fang-Fang Wang Jie Wang Xiang-Ping Wang Mei-Juan Zou Fei Ma Michael T Madigan Yukihiro Kimura Zheng-Yu Wang-Otomo Long-Jiang Yu Source Type: research

Breeding exceptionally fragrant soybeans for soy milk with strong aroma
J Integr Plant Biol. 2024 Feb 23. doi: 10.1111/jipb.13631. Online ahead of print.NO ABSTRACTPMID:38390811 | DOI:10.1111/jipb.13631 (Source: Journal of Integrative Plant Biology)
Source: Journal of Integrative Plant Biology - February 23, 2024 Category: Biology Authors: Hongtao Xie Minglei Song Xuesong Cao Qingfeng Niu Jianhua Zhu Shasha Li Xin Wang Xiaomu Niu Jian-Kang Zhu Source Type: research

Modulation of starch synthesis in Arabidopsis via phytochrome B-mediated light signal transduction
This study provides insight into the physiological and molecular functions of phyB and its downstream transcription factors HY5 and PIFs in starch synthesis regulation, shedding light on the regulatory mechanism by which plants synchronize dynamic light signals with metabolic cues to module starch synthesis.PMID:38391049 | DOI:10.1111/jipb.13630 (Source: Journal of Integrative Plant Biology)
Source: Journal of Integrative Plant Biology - February 23, 2024 Category: Biology Authors: Qingbiao Shi Ying Xia Na Xue Qibin Wang Qing Tao Mingjing Li Di Xu Xiaofei Wang Fanying Kong Haisen Zhang Gang Li Source Type: research

Breeding exceptionally fragrant soybeans for soy milk with strong aroma
J Integr Plant Biol. 2024 Feb 23. doi: 10.1111/jipb.13631. Online ahead of print.NO ABSTRACTPMID:38390811 | DOI:10.1111/jipb.13631 (Source: Journal of Integrative Plant Biology)
Source: Journal of Integrative Plant Biology - February 23, 2024 Category: Biology Authors: Hongtao Xie Minglei Song Xuesong Cao Qingfeng Niu Jianhua Zhu Shasha Li Xin Wang Xiaomu Niu Jian-Kang Zhu Source Type: research

Modulation of starch synthesis in Arabidopsis via phytochrome B-mediated light signal transduction
This study provides insight into the physiological and molecular functions of phyB and its downstream transcription factors HY5 and PIFs in starch synthesis regulation, shedding light on the regulatory mechanism by which plants synchronize dynamic light signals with metabolic cues to module starch synthesis.PMID:38391049 | DOI:10.1111/jipb.13630 (Source: Journal of Integrative Plant Biology)
Source: Journal of Integrative Plant Biology - February 23, 2024 Category: Biology Authors: Qingbiao Shi Ying Xia Na Xue Qibin Wang Qing Tao Mingjing Li Di Xu Xiaofei Wang Fanying Kong Haisen Zhang Gang Li Source Type: research

Breeding exceptionally fragrant soybeans for soy milk with strong aroma
J Integr Plant Biol. 2024 Feb 23. doi: 10.1111/jipb.13631. Online ahead of print.NO ABSTRACTPMID:38390811 | DOI:10.1111/jipb.13631 (Source: Journal of Integrative Plant Biology)
Source: Journal of Integrative Plant Biology - February 23, 2024 Category: Biology Authors: Hongtao Xie Minglei Song Xuesong Cao Qingfeng Niu Jianhua Zhu Shasha Li Xin Wang Xiaomu Niu Jian-Kang Zhu Source Type: research

Modulation of starch synthesis in Arabidopsis via phytochrome B-mediated light signal transduction
This study provides insight into the physiological and molecular functions of phyB and its downstream transcription factors HY5 and PIFs in starch synthesis regulation, shedding light on the regulatory mechanism by which plants synchronize dynamic light signals with metabolic cues to module starch synthesis.PMID:38391049 | DOI:10.1111/jipb.13630 (Source: Journal of Integrative Plant Biology)
Source: Journal of Integrative Plant Biology - February 23, 2024 Category: Biology Authors: Qingbiao Shi Ying Xia Na Xue Qibin Wang Qing Tao Mingjing Li Di Xu Xiaofei Wang Fanying Kong Haisen Zhang Gang Li Source Type: research

A widely targeted metabolite modificomics strategy for modified metabolites identification in tomato
In this study, a widely targeted metabolite modificomics (WTMM) strategy was developed based on ultra-high performance liquid chromatography-quadrupole-linear ion trap (UHPLC-Q-Trap) and UHPLC-Q-Exactive-Orbitrap (UHPLC-QE-Orbitrap), which greatly improved the detection sensitivity and the efficiency of identification of modified metabolites. A metabolite modificomics study was carried out using tomato as a model, and over 34,000 signals with MS2 information were obtained from approximately 232 neutral loss transitions. Unbiased metabolite profiling was also performed by utilizing high-resolution mass spectrometry data to ...
Source: Journal of Integrative Plant Biology - February 20, 2024 Category: Biology Authors: Jun Yang Ridong Chen Chao Wang Chun Li Weizhen Ye Zhonghui Zhang Shouchuang Wang Source Type: research

A widely targeted metabolite modificomics strategy for modified metabolites identification in tomato
In this study, a widely targeted metabolite modificomics (WTMM) strategy was developed based on ultra-high performance liquid chromatography-quadrupole-linear ion trap (UHPLC-Q-Trap) and UHPLC-Q-Exactive-Orbitrap (UHPLC-QE-Orbitrap), which greatly improved the detection sensitivity and the efficiency of identification of modified metabolites. A metabolite modificomics study was carried out using tomato as a model, and over 34,000 signals with MS2 information were obtained from approximately 232 neutral loss transitions. Unbiased metabolite profiling was also performed by utilizing high-resolution mass spectrometry data to ...
Source: Journal of Integrative Plant Biology - February 20, 2024 Category: Biology Authors: Jun Yang Ridong Chen Chao Wang Chun Li Weizhen Ye Zhonghui Zhang Shouchuang Wang Source Type: research

A widely targeted metabolite modificomics strategy for modified metabolites identification in tomato
In this study, a widely targeted metabolite modificomics (WTMM) strategy was developed based on ultra-high performance liquid chromatography-quadrupole-linear ion trap (UHPLC-Q-Trap) and UHPLC-Q-Exactive-Orbitrap (UHPLC-QE-Orbitrap), which greatly improved the detection sensitivity and the efficiency of identification of modified metabolites. A metabolite modificomics study was carried out using tomato as a model, and over 34,000 signals with MS2 information were obtained from approximately 232 neutral loss transitions. Unbiased metabolite profiling was also performed by utilizing high-resolution mass spectrometry data to ...
Source: Journal of Integrative Plant Biology - February 20, 2024 Category: Biology Authors: Jun Yang Ridong Chen Chao Wang Chun Li Weizhen Ye Zhonghui Zhang Shouchuang Wang Source Type: research

Genomic analysis of Nypa fruticans elucidates its intertidal adaptations and early palm evolution
J Integr Plant Biol. 2024 Feb 19. doi: 10.1111/jipb.13625. Online ahead of print.ABSTRACTNypa fruticans (Wurmb), a mangrove palm species with origins dating back to the Late Cretaceous period, is a unique species for investigating long-term adaptation strategies to intertidal environments and the early evolution of palms. Here, we present a chromosome-level genome sequence and assembly for N. fruticans. We integrated the genomes of N. fruticans and other palm family members for a comparative genomic analysis, which confirmed that the common ancestor of all palms experienced a whole-genome duplication event around 89 millio...
Source: Journal of Integrative Plant Biology - February 19, 2024 Category: Biology Authors: Weihong Wu Xiao Feng Nan Wang Shao Shao Min Liu Fa Si Linhao Chen Chuanfeng Jin Shaohua Xu Zixiao Guo Cairong Zhong Suhua Shi Ziwen He Source Type: research

Genomic analysis of Nypa fruticans elucidates its intertidal adaptations and early palm evolution
J Integr Plant Biol. 2024 Feb 19. doi: 10.1111/jipb.13625. Online ahead of print.ABSTRACTNypa fruticans (Wurmb), a mangrove palm species with origins dating back to the Late Cretaceous period, is a unique species for investigating long-term adaptation strategies to intertidal environments and the early evolution of palms. Here, we present a chromosome-level genome sequence and assembly for N. fruticans. We integrated the genomes of N. fruticans and other palm family members for a comparative genomic analysis, which confirmed that the common ancestor of all palms experienced a whole-genome duplication event around 89 millio...
Source: Journal of Integrative Plant Biology - February 19, 2024 Category: Biology Authors: Weihong Wu Xiao Feng Nan Wang Shao Shao Min Liu Fa Si Linhao Chen Chuanfeng Jin Shaohua Xu Zixiao Guo Cairong Zhong Suhua Shi Ziwen He Source Type: research

An alfalfa MYB-like transcriptional factor MsMYBH positively regulates alfalfa seedling drought resistance and undergoes MsWAV3-mediated degradation
J Integr Plant Biol. 2024 Feb 15. doi: 10.1111/jipb.13626. Online ahead of print.ABSTRACTDrought is a major threat to alfalfa (Medicago sativa L.) production. The discovery of important alfalfa genes regulating drought response will facilitate breeding for drought-resistant alfalfa cultivars. Here, we report a genome-wide association study of drought resistance in alfalfa. We identified and functionally characterized an MYB-like transcription factor gene (MsMYBH), which increases the drought resistance in alfalfa. Compared with the wild-types, the biomass and forage quality were enhanced in MsMYBH overexpressed plants. Com...
Source: Journal of Integrative Plant Biology - February 15, 2024 Category: Biology Authors: Kun Shi Jia Liu Huan Liang Hongbin Dong Jinli Zhang Yuanhong Wei Le Zhou Shaopeng Wang Jiahao Zhu Mingshu Cao Chris S Jones Dongmei Ma Zan Wang Source Type: research