Relating genes to function: identifying enriched transcription factors using the ENCODE ChIP-Seq significance tool
We present the ENCODE ChIP-Seq Significance Tool, a flexible web application leveraging public ENCODE data to identify enriched transcription factors in a gene or transcript list for comparative analyses.
Implementation: The ENCODE ChIP-Seq Significance Tool is written in JavaScript on the client side and has been tested on Google Chrome, Apple Safari and Mozilla Firefox browsers. Server-side scripts are written in PHP and leverage R and a MySQL database. The tool is available at http://encodeqt.stanford.edu.
Contact: abutte@stanford.edu
Supplementary information: Supplementary material is available at Bioinformatics online.
Source: Bioinformatics - Category: Bioinformatics Authors: Auerbach, R. K., Chen, B., Butte, A. J. Tags: DATABASES AND ONTOLOGIES Source Type: research