SNPs detection by eBWT positional clustering.

Conclusions: Based on the results of the experiments on synthetic and real data, we conclude that the positional clustering framework can be effectively used for the problem of identifying SNPs, and it appears to be a promising approach for calling other type of variants directly on raw sequencing data.
Availability: The software ebwt2snp is freely available for academic use at: https://github.com/nicolaprezza/ebwt2snp.
PMID: 30839919 [PubMed]

Source: Algorithms for Molecular Biology : AMB - March 8, 2019 Category: Molecular Biology Authors: Prezza N, Pisanti N, Sciortino M, Rosone G Tags: Algorithms Mol Biol Source Type: research