FSH: fast spaced seed hashing exploiting adjacent hashes.

Conclusions: Spaced seed hashing is a routine task for several bioinformatics application. FSH allows to perform this task efficiently and raise the question of whether other hashing can be exploited to further improve the speed up. This has the potential of major impact in the field, making spaced seed applications not only accurate, but also faster and more efficient. Availability: The software FSH is freely available for academic use at: https://bitbucket.org/samu661/fsh/overview. PMID: 29588651 [PubMed]
Source: Algorithms for Molecular Biology : AMB - Category: Molecular Biology Authors: Tags: Algorithms Mol Biol Source Type: research