My own “404 not found”: making amends using Github

Conclusion
I’m now in a position to run this analysis at regular intervals – probably monthly – and push the results to Github. Watch this space for any interesting developments.
Making this kind of pipeline available and reproducible by others is less easy. If you have access to a machine with all the prerequisites, clone the repository, replace the symlinks to database directories with real directories, change to the directory code/ruby and run the rake tasks – well, you might be able to do the same thing. But you’d probably rather sequence the human microbiome.Filed under: bioinformatics, research diary, ruby Tagged: archaea, database, est, github

Source: What You're Doing Is Rather Desperate - July 21, 2014 Category: Bioinformaticians Authors: nsaunders Tags: bioinformatics research diary ruby archaea database est github Source Type: blogs