Measuring criticality in control of complex biological networks

NPJ Syst Biol Appl. 2024 Jan 20;10(1):9. doi: 10.1038/s41540-024-00333-9.ABSTRACTRecent controllability analyses have demonstrated that driver nodes tend to be associated to genes related to important biological functions as well as human diseases. While researchers have focused on identifying critical nodes, intermittent nodes have received much less attention. Here, we propose a new efficient algorithm based on the Hamming distance for computing the importance of intermittent nodes using a Minimum Dominating Set (MDS)-based control model. We refer to this metric as criticality. The application of the proposed algorithm to compute criticality under the MDS control framework allows us to unveil the biological importance and roles of the intermittent nodes in different network systems, from cellular level such as signaling pathways and cell-cell interactions such as cytokine networks, to the complete nervous system of the nematode worm C. elegans. Taken together, the developed computational tools may open new avenues for investigating the role of intermittent nodes in many biological systems of interest in the context of network control.PMID:38245555 | PMC:PMC10799883 | DOI:10.1038/s41540-024-00333-9

Source: Appl Human Sci - January 20, 2024 Category: Physiology Authors: Wataru Someya Tatsuya Akutsu Jean-Marc Schwartz Jose C Nacher Source Type: research