Discerning conformational dynamics and binding kinetics of GPCRs by < sup > 19 < /sup > F NMR

Curr Opin Pharmacol. 2023 Apr 17:102377. doi: 10.1016/j.coph.2023.102377. Online ahead of print.ABSTRACT19F NMR provides a way of monitoring conformational dynamics of G-protein coupled receptors (GPCRs) from the perspective of an ensemble. While X-ray crystallography provides exquisitely resolved high-resolution structures of specific states, it generally does not recapitulate the true ensemble of functional states. Fluorine (19F) NMR provides a highly sensitive spectroscopic window into the conformational ensemble, generally permitting the direct quantification of resolvable states. Moreover, straightforward T1- and T2-based relaxation experiments allow for the study of fluctuations within a given state and exchange between states, on timescales spanning nanoseconds to seconds. Conveniently, most biological systems are free of fluorine. Thus, via fluorinated amino acid analogues or thiol-reactive fluorinated tags, F or CF3 reporters can be site specifically incorporated into proteins of interest. In this review, fluorine labeling protocols and 19F NMR experiments will be presented, from the perspective of small molecule NMR (i.e. drug or small molecule interactions with receptors) or macromolecular NMR (i.e. conformational dynamics of receptors and receptor-G-protein complexes).PMID:37612172 | DOI:10.1016/j.coph.2023.102377
Source: Current Opinion in Pharmacology - Category: Drugs & Pharmacology Authors: Source Type: research