Whole genome sequencing and annotation of a lysogenic phage vB_EcoP_DE5 isolated from donkey-derived Escherichia coli

AbstractA lysogenic phage vB_EcoP_DE5 (hereafter designated DE5) was isolated from donkey-derivedEscherichia coli. The bacteriophage was examined by transmission electron microscopy, and the result showed that DE5 belonged to the genusKuravirus. DE5 was sensitive to changes in temperature and pH, and it could maintain its activity at pH 7 and below 60  ℃. The whole genome sequencing revealed that DE5 had a double-stranded DNA genome of 177, 305 bp with 42.09% G+C content. A total of 126 open reading frames (ORFs) were identified, including functional genes related to phage integration, DNA replication and modification, transcriptional regulat ion, structural and packaging proteins, and host cell lysis. One phage integrase gene, one autotransporter adhesin gene, and one tRNA gene were predicted in the whole genome, and no genes associated with drug resistance were identified. The phage DE5 integrase contained 187 amino acids and belonged to the small serine recombinase family. BLASTn analysis revealed that phage DE5 had a high-sequence identity (96%) withE. coli phage SU10. Phylogenetic analysis showed that phage DE5 was a member of the genusKuravirus. The whole genome sequencing of lysogenic phage DE5 enhanced our understanding of lysogenic phages and their therapeutic applications.
Source: Virus Genes - Category: Genetics & Stem Cells Source Type: research