GSE153146 ChIPseq on H4K20me1 on TX1072 cell line at different times of Xist induction through Doxycycline.

Contributors : Sjoerd Tjalsma ; Mayako Hori ; Yuko Sato ; Aurelie Bousard ; Akito Ohi ; Ana C Raposo ; Julia Roensch ; Agnes Le Saux ; Junpei Nogami ; Kazumitsu Maehara ; Tomoya Kujirai ; Yasuyuki Ohkawa ; Hitoshi Kurumizaka ; Sim ão Teixeira da Rocha ; Jan J Żylicz ; Hiroshi Kimura ; Edith HeardSeries Type : Genome binding/occupancy profiling by high throughput sequencingOrganism : Mus musculusDuring X chromosome inactivation (XCI), in female mammals, gene silencing is initiated by a long-noncoding RNA, called Xist. Xist RNA accumulation also allows for the deposition of specific chromatin marks. Among others, PRC2-dependent H3K27me3 and PrSet7-dependent H4K20me1 become enriched at the inactive X chromosome. However, the dynamics of this process in relation to Xist RNA accumulation remains unknown as is the molecular mechanism allowing for H4K20me1 enrichment. To follow XCI dynamics in living cells, we developed a genetically encoded, H3K27me3-specific intracellular antibody, or H3K27me3-mintbody. By combining it with live-imaging of H4K20me1, the X chromosome and Xist RNA we uncover striking similarities in the accumulation dynamics of H3K27me3 and H4K20me1. Further ChIP-seq analysis confirmed concurrent accumulation of H4K20me1 and H3K27me3 during XCI albeit with distinct genomic distributions. Xist B and C repeat mutant, which can silence the X but does not allow for H3K27me3 enrichment, also showed lack of H4K20me1 deposition. Thus, both H3K27me3 and H4K...

Source: GEO: Gene Expression Omnibus - February 26, 2021 Category: Genetics & Stem Cells Tags: Genome binding/occupancy profiling by high throughput sequencing Mus musculus Source Type: research