scAN1.0: A reproducible and standardized pipeline for processing 10X single cell RNAseq data
In Silico Biol. 2023;15(1-2):11-21. doi: 10.3233/ISB-220252.ABSTRACTSingle cell transcriptomics has recently seen a surge in popularity, leading to the need for data analysis pipelines that are reproducible, modular, and interoperable across different systems and institutions.To meet this demand, we introduce scAN1.0, a processing pipeline for analyzing 10X single cell RNA sequencing data. scAN1.0 is built using the Nextflow DSL2 and can be run on most computational systems. The modular design of Nextflow pipelines enables easy integration and evaluation of different blocks for specific analysis steps.We demonstrate the us...
Source: In Silico Biol - November 6, 2023 Category: Biology Authors: Maxime Lepetit Mirela Diana Ilie Marie Chanal Gerald Raverot Philippe Bertolino Christophe Arpin Franck Picard Olivier Gandrillon Source Type: research
scAN1.0: A reproducible and standardized pipeline for processing 10X single cell RNAseq data
In Silico Biol. 2023;15(1-2):11-21. doi: 10.3233/ISB-220252.ABSTRACTSingle cell transcriptomics has recently seen a surge in popularity, leading to the need for data analysis pipelines that are reproducible, modular, and interoperable across different systems and institutions.To meet this demand, we introduce scAN1.0, a processing pipeline for analyzing 10X single cell RNA sequencing data. scAN1.0 is built using the Nextflow DSL2 and can be run on most computational systems. The modular design of Nextflow pipelines enables easy integration and evaluation of different blocks for specific analysis steps.We demonstrate the us...
Source: In Silico Biol - November 6, 2023 Category: Biology Authors: Maxime Lepetit Mirela Diana Ilie Marie Chanal Gerald Raverot Philippe Bertolino Christophe Arpin Franck Picard Olivier Gandrillon Source Type: research
scAN1.0: A reproducible and standardized pipeline for processing 10X single cell RNAseq data
In Silico Biol. 2023;15(1-2):11-21. doi: 10.3233/ISB-220252.ABSTRACTSingle cell transcriptomics has recently seen a surge in popularity, leading to the need for data analysis pipelines that are reproducible, modular, and interoperable across different systems and institutions.To meet this demand, we introduce scAN1.0, a processing pipeline for analyzing 10X single cell RNA sequencing data. scAN1.0 is built using the Nextflow DSL2 and can be run on most computational systems. The modular design of Nextflow pipelines enables easy integration and evaluation of different blocks for specific analysis steps.We demonstrate the us...
Source: In Silico Biol - November 6, 2023 Category: Biology Authors: Maxime Lepetit Mirela Diana Ilie Marie Chanal Gerald Raverot Philippe Bertolino Christophe Arpin Franck Picard Olivier Gandrillon Source Type: research
scAN1.0: A reproducible and standardized pipeline for processing 10X single cell RNAseq data
In Silico Biol. 2023;15(1-2):11-21. doi: 10.3233/ISB-220252.ABSTRACTSingle cell transcriptomics has recently seen a surge in popularity, leading to the need for data analysis pipelines that are reproducible, modular, and interoperable across different systems and institutions.To meet this demand, we introduce scAN1.0, a processing pipeline for analyzing 10X single cell RNA sequencing data. scAN1.0 is built using the Nextflow DSL2 and can be run on most computational systems. The modular design of Nextflow pipelines enables easy integration and evaluation of different blocks for specific analysis steps.We demonstrate the us...
Source: In Silico Biol - November 6, 2023 Category: Biology Authors: Maxime Lepetit Mirela Diana Ilie Marie Chanal Gerald Raverot Philippe Bertolino Christophe Arpin Franck Picard Olivier Gandrillon Source Type: research
scAN1.0: A reproducible and standardized pipeline for processing 10X single cell RNAseq data
In Silico Biol. 2023;15(1-2):11-21. doi: 10.3233/ISB-220252.ABSTRACTSingle cell transcriptomics has recently seen a surge in popularity, leading to the need for data analysis pipelines that are reproducible, modular, and interoperable across different systems and institutions.To meet this demand, we introduce scAN1.0, a processing pipeline for analyzing 10X single cell RNA sequencing data. scAN1.0 is built using the Nextflow DSL2 and can be run on most computational systems. The modular design of Nextflow pipelines enables easy integration and evaluation of different blocks for specific analysis steps.We demonstrate the us...
Source: In Silico Biol - November 6, 2023 Category: Biology Authors: Maxime Lepetit Mirela Diana Ilie Marie Chanal Gerald Raverot Philippe Bertolino Christophe Arpin Franck Picard Olivier Gandrillon Source Type: research
scAN1.0: A reproducible and standardized pipeline for processing 10X single cell RNAseq data
In Silico Biol. 2023;15(1-2):11-21. doi: 10.3233/ISB-220252.ABSTRACTSingle cell transcriptomics has recently seen a surge in popularity, leading to the need for data analysis pipelines that are reproducible, modular, and interoperable across different systems and institutions.To meet this demand, we introduce scAN1.0, a processing pipeline for analyzing 10X single cell RNA sequencing data. scAN1.0 is built using the Nextflow DSL2 and can be run on most computational systems. The modular design of Nextflow pipelines enables easy integration and evaluation of different blocks for specific analysis steps.We demonstrate the us...
Source: In Silico Biol - November 6, 2023 Category: Biology Authors: Maxime Lepetit Mirela Diana Ilie Marie Chanal Gerald Raverot Philippe Bertolino Christophe Arpin Franck Picard Olivier Gandrillon Source Type: research
scAN1.0: A reproducible and standardized pipeline for processing 10X single cell RNAseq data
In Silico Biol. 2023;15(1-2):11-21. doi: 10.3233/ISB-220252.ABSTRACTSingle cell transcriptomics has recently seen a surge in popularity, leading to the need for data analysis pipelines that are reproducible, modular, and interoperable across different systems and institutions.To meet this demand, we introduce scAN1.0, a processing pipeline for analyzing 10X single cell RNA sequencing data. scAN1.0 is built using the Nextflow DSL2 and can be run on most computational systems. The modular design of Nextflow pipelines enables easy integration and evaluation of different blocks for specific analysis steps.We demonstrate the us...
Source: In Silico Biol - November 6, 2023 Category: Biology Authors: Maxime Lepetit Mirela Diana Ilie Marie Chanal Gerald Raverot Philippe Bertolino Christophe Arpin Franck Picard Olivier Gandrillon Source Type: research
scAN1.0: A reproducible and standardized pipeline for processing 10X single cell RNAseq data
In Silico Biol. 2023;15(1-2):11-21. doi: 10.3233/ISB-220252.ABSTRACTSingle cell transcriptomics has recently seen a surge in popularity, leading to the need for data analysis pipelines that are reproducible, modular, and interoperable across different systems and institutions.To meet this demand, we introduce scAN1.0, a processing pipeline for analyzing 10X single cell RNA sequencing data. scAN1.0 is built using the Nextflow DSL2 and can be run on most computational systems. The modular design of Nextflow pipelines enables easy integration and evaluation of different blocks for specific analysis steps.We demonstrate the us...
Source: In Silico Biol - November 6, 2023 Category: Biology Authors: Maxime Lepetit Mirela Diana Ilie Marie Chanal Gerald Raverot Philippe Bertolino Christophe Arpin Franck Picard Olivier Gandrillon Source Type: research
scAN1.0: A reproducible and standardized pipeline for processing 10X single cell RNAseq data
In Silico Biol. 2023;15(1-2):11-21. doi: 10.3233/ISB-220252.ABSTRACTSingle cell transcriptomics has recently seen a surge in popularity, leading to the need for data analysis pipelines that are reproducible, modular, and interoperable across different systems and institutions.To meet this demand, we introduce scAN1.0, a processing pipeline for analyzing 10X single cell RNA sequencing data. scAN1.0 is built using the Nextflow DSL2 and can be run on most computational systems. The modular design of Nextflow pipelines enables easy integration and evaluation of different blocks for specific analysis steps.We demonstrate the us...
Source: In Silico Biol - November 6, 2023 Category: Biology Authors: Maxime Lepetit Mirela Diana Ilie Marie Chanal Gerald Raverot Philippe Bertolino Christophe Arpin Franck Picard Olivier Gandrillon Source Type: research
scAN1.0: A reproducible and standardized pipeline for processing 10X single cell RNAseq data
In Silico Biol. 2023;15(1-2):11-21. doi: 10.3233/ISB-220252.ABSTRACTSingle cell transcriptomics has recently seen a surge in popularity, leading to the need for data analysis pipelines that are reproducible, modular, and interoperable across different systems and institutions.To meet this demand, we introduce scAN1.0, a processing pipeline for analyzing 10X single cell RNA sequencing data. scAN1.0 is built using the Nextflow DSL2 and can be run on most computational systems. The modular design of Nextflow pipelines enables easy integration and evaluation of different blocks for specific analysis steps.We demonstrate the us...
Source: In Silico Biol - November 6, 2023 Category: Biology Authors: Maxime Lepetit Mirela Diana Ilie Marie Chanal Gerald Raverot Philippe Bertolino Christophe Arpin Franck Picard Olivier Gandrillon Source Type: research
scAN1.0: A reproducible and standardized pipeline for processing 10X single cell RNAseq data
In Silico Biol. 2023;15(1-2):11-21. doi: 10.3233/ISB-220252.ABSTRACTSingle cell transcriptomics has recently seen a surge in popularity, leading to the need for data analysis pipelines that are reproducible, modular, and interoperable across different systems and institutions.To meet this demand, we introduce scAN1.0, a processing pipeline for analyzing 10X single cell RNA sequencing data. scAN1.0 is built using the Nextflow DSL2 and can be run on most computational systems. The modular design of Nextflow pipelines enables easy integration and evaluation of different blocks for specific analysis steps.We demonstrate the us...
Source: In Silico Biol - November 6, 2023 Category: Biology Authors: Maxime Lepetit Mirela Diana Ilie Marie Chanal Gerald Raverot Philippe Bertolino Christophe Arpin Franck Picard Olivier Gandrillon Source Type: research
scAN1.0: A reproducible and standardized pipeline for processing 10X single cell RNAseq data
In Silico Biol. 2023;15(1-2):11-21. doi: 10.3233/ISB-220252.ABSTRACTSingle cell transcriptomics has recently seen a surge in popularity, leading to the need for data analysis pipelines that are reproducible, modular, and interoperable across different systems and institutions.To meet this demand, we introduce scAN1.0, a processing pipeline for analyzing 10X single cell RNA sequencing data. scAN1.0 is built using the Nextflow DSL2 and can be run on most computational systems. The modular design of Nextflow pipelines enables easy integration and evaluation of different blocks for specific analysis steps.We demonstrate the us...
Source: In Silico Biol - November 6, 2023 Category: Biology Authors: Maxime Lepetit Mirela Diana Ilie Marie Chanal Gerald Raverot Philippe Bertolino Christophe Arpin Franck Picard Olivier Gandrillon Source Type: research
scAN1.0: A reproducible and standardized pipeline for processing 10X single cell RNAseq data
In Silico Biol. 2023;15(1-2):11-21. doi: 10.3233/ISB-220252.ABSTRACTSingle cell transcriptomics has recently seen a surge in popularity, leading to the need for data analysis pipelines that are reproducible, modular, and interoperable across different systems and institutions.To meet this demand, we introduce scAN1.0, a processing pipeline for analyzing 10X single cell RNA sequencing data. scAN1.0 is built using the Nextflow DSL2 and can be run on most computational systems. The modular design of Nextflow pipelines enables easy integration and evaluation of different blocks for specific analysis steps.We demonstrate the us...
Source: In Silico Biol - November 6, 2023 Category: Biology Authors: Maxime Lepetit Mirela Diana Ilie Marie Chanal Gerald Raverot Philippe Bertolino Christophe Arpin Franck Picard Olivier Gandrillon Source Type: research
scAN1.0: A reproducible and standardized pipeline for processing 10X single cell RNAseq data
In Silico Biol. 2023;15(1-2):11-21. doi: 10.3233/ISB-220252.ABSTRACTSingle cell transcriptomics has recently seen a surge in popularity, leading to the need for data analysis pipelines that are reproducible, modular, and interoperable across different systems and institutions.To meet this demand, we introduce scAN1.0, a processing pipeline for analyzing 10X single cell RNA sequencing data. scAN1.0 is built using the Nextflow DSL2 and can be run on most computational systems. The modular design of Nextflow pipelines enables easy integration and evaluation of different blocks for specific analysis steps.We demonstrate the us...
Source: In Silico Biol - November 6, 2023 Category: Biology Authors: Maxime Lepetit Mirela Diana Ilie Marie Chanal Gerald Raverot Philippe Bertolino Christophe Arpin Franck Picard Olivier Gandrillon Source Type: research
scAN1.0: A reproducible and standardized pipeline for processing 10X single cell RNAseq data
In Silico Biol. 2023;15(1-2):11-21. doi: 10.3233/ISB-220252.ABSTRACTSingle cell transcriptomics has recently seen a surge in popularity, leading to the need for data analysis pipelines that are reproducible, modular, and interoperable across different systems and institutions.To meet this demand, we introduce scAN1.0, a processing pipeline for analyzing 10X single cell RNA sequencing data. scAN1.0 is built using the Nextflow DSL2 and can be run on most computational systems. The modular design of Nextflow pipelines enables easy integration and evaluation of different blocks for specific analysis steps.We demonstrate the us...
Source: In Silico Biol - November 6, 2023 Category: Biology Authors: Maxime Lepetit Mirela Diana Ilie Marie Chanal Gerald Raverot Philippe Bertolino Christophe Arpin Franck Picard Olivier Gandrillon Source Type: research
