Biophysical and computational methods to analyze amino acid interaction networks in proteins

Publication date: 2016 Source:Computational and Structural Biotechnology Journal, Volume 14 Author(s): Kathleen F. O'Rourke, Scott D. Gorman, David D. Boehr Globular proteins are held together by interacting networks of amino acid residues. A number of different structural and computational methods have been developed to interrogate these amino acid networks. In this review, we describe some of these methods, including analyses of X-ray crystallographic data and structures, computer simulations, NMR data, and covariation among protein sequences, and indicate the critical insights that such methods provide into protein function. This information can be leveraged towards the design of new allosteric drugs, and the engineering of new protein function and protein regulation strategies.
Source: Computational and Structural Biotechnology Journal - Category: Biotechnology Source Type: research