Comparison between microbiomes collected from different bacterial and fungal selective culture media used for silage microbiology
Publication date: Available online 20 October 2020Source: Journal of Microbiological MethodsAuthor(s): Pascal Drouin, Francesco Ferrero (Source: Journal of Microbiological Methods)
Source: Journal of Microbiological Methods - October 21, 2020 Category: Microbiology Source Type: research

Current approaches for the detection of Coxiella burnetii infection in humans and animals
Publication date: Available online 18 October 2020Source: Journal of Microbiological MethodsAuthor(s): Radhakrishna Sahu, Deepak B. Rawool, Valil Kunjukunju Vinod, S.V.S. Malik, Sukhadeo B. Barbuddhe (Source: Journal of Microbiological Methods)
Source: Journal of Microbiological Methods - October 19, 2020 Category: Microbiology Source Type: research

A panel of bioluminescent whole-cell bacterial biosensors for the screening for new antibacterial substances from natural extracts
Publication date: Available online 14 October 2020Source: Journal of Microbiological MethodsAuthor(s): Emmi Poikulainen, Jenni Tienaho, Tytti Sarjala, Ville Santala (Source: Journal of Microbiological Methods)
Source: Journal of Microbiological Methods - October 15, 2020 Category: Microbiology Source Type: research

Ethanol determination in fermented sugarcane substrates by a diffusive micro-distillation device.
Publication date: Available online 15 October 2020Source: Journal of Microbiological MethodsAuthor(s): Marcos A.S. Brasil, Luiz H. Gomes, Marcos Y. Kamogawa, Luiz Carlos Basso (Source: Journal of Microbiological Methods)
Source: Journal of Microbiological Methods - October 15, 2020 Category: Microbiology Source Type: research

A comparison of E. coli concentration estimates quantified by the EPA and a Michigan laboratory network using EPA Draft Method C
Publication date: Available online 13 October 2020Source: Journal of Microbiological MethodsAuthor(s): Molly J. Lane, Richard R. Rediske, James N. McNair, Shannon Briggs, Geoff Rhodes, Erin Dreelin, Tami Sivy, Matthew Flood, Brian Scull, David Szlag, Benjamin Southwell, Natasha M. Isaacs, Schuyler Pike (Source: Journal of Microbiological Methods)
Source: Journal of Microbiological Methods - October 13, 2020 Category: Microbiology Source Type: research

Evaluation of two commercial methods for rapid detection of the carbapenemase-producing Klebsiella pneumoniae
Publication date: Available online 10 October 2020Source: Journal of Microbiological MethodsAuthor(s): Gulsen Altinkanat Gelmez, Barıs Can, Ufuk Hasdemir, Guner Soyletir (Source: Journal of Microbiological Methods)
Source: Journal of Microbiological Methods - October 12, 2020 Category: Microbiology Source Type: research

Evaluation of a new chromogenic agar for the detection of environmental Enterococcus
Publication date: Available online 8 October 2020Source: Journal of Microbiological MethodsAuthor(s): Sohyun Cho, Lari M. Hiott, Tiffanie A. Woodley, Jonathan G. Frye, Charlene R. Jackson (Source: Journal of Microbiological Methods)
Source: Journal of Microbiological Methods - October 9, 2020 Category: Microbiology Source Type: research

Regimen and different surfaces interfere with photodynamic therapy on Candida albicans biofilms
Publication date: Available online 8 October 2020Source: Journal of Microbiological MethodsAuthor(s): Bruna Albuquerque Garcia, Beatriz Helena Dias Panariello, Karina Matthes de Freitas Pontes, Simone Duarte (Source: Journal of Microbiological Methods)
Source: Journal of Microbiological Methods - October 9, 2020 Category: Microbiology Source Type: research

Development and application of a real-time PCR assay for the sensitive detection of diarrheic toxin producer Prorocentrum lima
Publication date: Available online 6 October 2020Source: Journal of Microbiological MethodsAuthor(s): Mohamed Barkallah, Jihen Elleuch, Kirsty F. Smith, Siwar Chaari, Idriss Ben Neila, Imen Fendri, Philippe Michaud, Slim Abdelkafi (Source: Journal of Microbiological Methods)
Source: Journal of Microbiological Methods - October 7, 2020 Category: Microbiology Source Type: research

Editorial Board
Publication date: October 2020Source: Journal of Microbiological Methods, Volume 177Author(s): (Source: Journal of Microbiological Methods)
Source: Journal of Microbiological Methods - October 6, 2020 Category: Microbiology Source Type: research

Reduction of the Carbapenemase Inactivation Method (CIM) assay time by real-time PCR
Publication date: Available online 6 October 2020Source: Journal of Microbiological MethodsAuthor(s): F. Haque, S. Fisseha, P. Athamanolap, R. Tower, J. Ortega, C. Dominguez, T. Maruca, D. Torpey, R. Myers, P. Laksanalamai (Source: Journal of Microbiological Methods)
Source: Journal of Microbiological Methods - October 6, 2020 Category: Microbiology Source Type: research

A method to quantify viable carbapenem resistant gram-negative bacteria in treated and untreated wastewater
Publication date: Available online 2 October 2020Source: Journal of Microbiological MethodsAuthor(s): Ryan A. Reinke, Jennipher Quach-Cu, Nigel Allison, Bellanira Lynch, Caroline Crisostomo, Michele Padilla (Source: Journal of Microbiological Methods)
Source: Journal of Microbiological Methods - October 3, 2020 Category: Microbiology Source Type: research

Rapid and dynamic detection of antimicrobial treatment response using spectral amplitude modulation in MZO nanostructure-modified quartz crystal microbalance
Publication date: Available online 2 October 2020Source: Journal of Microbiological MethodsAuthor(s): Yifan Wu, Guangyuan Li, Yuzhi Hong, Xilin Zhao, Pavel Ivanoff Reyes, Yicheng Lu (Source: Journal of Microbiological Methods)
Source: Journal of Microbiological Methods - October 3, 2020 Category: Microbiology Source Type: research

Small bias of one highly dominant taxon on community analyses using amplicon sequencing
Publication date: Available online 29 September 2020Source: Journal of Microbiological MethodsAuthor(s): Johanna Mayerhofer, Jürg Enkerli, Franco Widmer (Source: Journal of Microbiological Methods)
Source: Journal of Microbiological Methods - September 30, 2020 Category: Microbiology Source Type: research

A qPCR-MPN method for rapid quantification of Escherichia coli in bivalve molluscan shellfish
Publication date: Available online 24 September 2020Source: Journal of Microbiological MethodsAuthor(s): David I. Walker, Basil C.T. Fok, Charlotte L. Ford (Source: Journal of Microbiological Methods)
Source: Journal of Microbiological Methods - September 25, 2020 Category: Microbiology Source Type: research

Optimization of a method for diversity analysis of anammox bacteria using high-throughput sequencing of 16S rRNA gene amplicon
Publication date: Available online 24 September 2020Source: Journal of Microbiological MethodsAuthor(s): Xiaomei Wen, Yiguo Hong, Jiapeng Wu, Yu Wang (Source: Journal of Microbiological Methods)
Source: Journal of Microbiological Methods - September 25, 2020 Category: Microbiology Source Type: research

Collection system investigation microbial source tracking (CSI-MST): Applying molecular markers to identify sewer infrastructure failures
Publication date: Available online 24 September 2020Source: Journal of Microbiological MethodsAuthor(s): Dana Gonzalez, David Keeling, Hannah Thompson, Allison Larson, Jack Denby, Kyle Curtis, Kathleen Yetka, Michael Rondini, Evan Yeargan, Todd Egerton, Danny Barker, Raul Gonzalez (Source: Journal of Microbiological Methods)
Source: Journal of Microbiological Methods - September 25, 2020 Category: Microbiology Source Type: research

Microbial biosensors for recreational and source waters
Publication date: October 2020Source: Journal of Microbiological Methods, Volume 177Author(s): H.D. Alan Lindquist (Source: Journal of Microbiological Methods)
Source: Journal of Microbiological Methods - September 24, 2020 Category: Microbiology Source Type: research

In-house method for direct bacterial identification in positive blood culture broths using microfiltration, bead beating, and matrix-assisted laser desorption/ionization time-of-flight mass spectrometry
Publication date: Available online 20 September 2020Source: Journal of Microbiological MethodsAuthor(s): Young Jin Ko, Joong-Ki Kook, Chang Kyu Lee (Source: Journal of Microbiological Methods)
Source: Journal of Microbiological Methods - September 21, 2020 Category: Microbiology Source Type: research

Novel specific peaks for differentiating the Lactobacillus plantarum group using matrix-assisted laser desorption ionization time-of-flight mass spectrometry
Publication date: Available online 20 September 2020Source: Journal of Microbiological MethodsAuthor(s): Eiseul Kim, Seung-Min Yang, Hyeon-Be Kim, Hae-Yeong Kim (Source: Journal of Microbiological Methods)
Source: Journal of Microbiological Methods - September 21, 2020 Category: Microbiology Source Type: research

Rapid detection of rifampicin-resistant Mycobacterium tuberculosis, based on isothermal DNA amplification and DNA chromatography
Publication date: Available online 17 September 2020Source: Journal of Microbiological MethodsAuthor(s): Yutaka Takarada, Takuya Kodera, Kumi Kobayashi, Chie Nakajima, Mitsuo Kawase, Yasuhiko Suzuki (Source: Journal of Microbiological Methods)
Source: Journal of Microbiological Methods - September 18, 2020 Category: Microbiology Source Type: research

A multiplex PCR kit for the detection of three major virulent genes in Enterococcus faecalis
Publication date: Available online 17 September 2020Source: Journal of Microbiological MethodsAuthor(s): Balakrishnan Meena, Lawrance Anburajan, Karthik Srinivasan Varma, Nambali Valsalan Vinithkumar, Ramalingam Kirubagaran, Gopal Dharani (Source: Journal of Microbiological Methods)
Source: Journal of Microbiological Methods - September 18, 2020 Category: Microbiology Source Type: research

Use of digital images to count colonies of biodiesel deteriogenic microorganisms
Publication date: Available online 18 September 2020Source: Journal of Microbiological MethodsAuthor(s): Camila Correa, Pedro Henrique A. Konzen, Ânderson R. Carvalho, Patrícia Giovanella, Fátima Menezes Bento, Marco Flores Ferrão (Source: Journal of Microbiological Methods)
Source: Journal of Microbiological Methods - September 18, 2020 Category: Microbiology Source Type: research

A simple sequence-based filtering method for the removal of contaminants in low-biomass 16S rRNA amplicon sequencing approaches
Publication date: Available online 16 September 2020Source: Journal of Microbiological MethodsAuthor(s): Cristina Zubiría-Barrera, Magdalena Stock, Robert Neubert, Antje Vester, Aylina Kulle, Antony Schneegans, Rasmus Leistner, Petra Gastmeier, Hortense Slevogt, Tilman E. Klassert (Source: Journal of Microbiological Methods)
Source: Journal of Microbiological Methods - September 17, 2020 Category: Microbiology Source Type: research

Microbial biosensors for recreational and source waters.
Publication date: Available online 15 September 2020Source: Journal of Microbiological MethodsAuthor(s): H.D. Alan Lindquist (Source: Journal of Microbiological Methods)
Source: Journal of Microbiological Methods - September 16, 2020 Category: Microbiology Source Type: research

A rapid screening method for the detection of specialised metabolites from bacteria: Induction and suppression of metabolites from Burkholderia species
Publication date: Available online 14 September 2020Source: Journal of Microbiological MethodsAuthor(s): Gordon Webster, Cerith Jones, Alex J. Mullins, Eshwar Mahenthiralingam (Source: Journal of Microbiological Methods)
Source: Journal of Microbiological Methods - September 15, 2020 Category: Microbiology Source Type: research

mCloverBlaster: A tool to make markerless deletions and fusions using lambda red and I-SceI in Gram-negative bacterial genomes
Publication date: Available online 12 September 2020Source: Journal of Microbiological MethodsAuthor(s): Kara M. Lehner, Nicholas A. Stella, Rachel C. Calvario, Robert M.Q. Shanks (Source: Journal of Microbiological Methods)
Source: Journal of Microbiological Methods - September 13, 2020 Category: Microbiology Source Type: research

Automatic Bacillus anthracis bacteria detection and segmentation in microscopic images using UNet++
Publication date: Available online 12 September 2020Source: Journal of Microbiological MethodsAuthor(s): Fatemeh Hoorali, Hossein Khosravi, Bagher Moradi (Source: Journal of Microbiological Methods)
Source: Journal of Microbiological Methods - September 13, 2020 Category: Microbiology Source Type: research

A simple method for high molecular-weight genomic DNA extraction suitable for long-read sequencing from spores of an obligate biotroph oomycete
Publication date: Available online 12 September 2020Source: Journal of Microbiological MethodsAuthor(s): Charlotte Penouilh-Suzette, Sandra Fourre, Guillaume Besnard, Laurence Godiard, Yann Pecrix (Source: Journal of Microbiological Methods)
Source: Journal of Microbiological Methods - September 13, 2020 Category: Microbiology Source Type: research

The utility of banana peel extract agar in the presumptive identification of Cryptococcus neoformans
Publication date: Available online 10 September 2020Source: Journal of Microbiological MethodsAuthor(s): Munesh K. Gupta, Payel Mallick, Nidhi Pandey, Vijay Shankar, Jaya Chakravarty, Ragini Tilak (Source: Journal of Microbiological Methods)
Source: Journal of Microbiological Methods - September 11, 2020 Category: Microbiology Source Type: research

Clinical evaluation of the APAS® Independence: Automated imaging and interpretation of urine cultures using artificial intelligence with composite reference standard discrepant resolution
Publication date: Available online 11 September 2020Source: Journal of Microbiological MethodsAuthor(s): Lisa Brenton, Mary Jo Waters, Tyman Stanford, Steven Giglio (Source: Journal of Microbiological Methods)
Source: Journal of Microbiological Methods - September 11, 2020 Category: Microbiology Source Type: research

Quick identification and epidemiological characterization of Francisella tularensis by MALDI-TOF mass spectrometry
Publication date: Available online 10 September 2020Source: Journal of Microbiological MethodsAuthor(s): Irene López-Ramos, Marta Hernández, David Rodríguez-Lázaro, María P. Gutiérrez, Pilar Zarzosa, Antonio Orduña, Gabriel A. March (Source: Journal of Microbiological Methods)
Source: Journal of Microbiological Methods - September 10, 2020 Category: Microbiology Source Type: research

A promoter assay system using gene targeting in agaricomycetes Pleurotus ostreatus and Coprinopsis cinerea
Publication date: Available online 9 September 2020Source: Journal of Microbiological MethodsAuthor(s): Dong Xuan Nguyen, Takehito Nakazawa, Genki Myo, Chikako Inoue, Masahiro Sakamoto, Yoichi Honda (Source: Journal of Microbiological Methods)
Source: Journal of Microbiological Methods - September 9, 2020 Category: Microbiology Source Type: research

A simple preservation method for the storage of Aspergillus fumigatus and Scedosporium apiospermum filamentous fungi isolated from the sputum of patients with cystic fibrosis (CF)
Publication date: Available online 7 September 2020Source: Journal of Microbiological MethodsAuthor(s): John E. Moore, B. Cherie Millar (Source: Journal of Microbiological Methods)
Source: Journal of Microbiological Methods - September 9, 2020 Category: Microbiology Source Type: research

Crosslinking of PCR primers reduces unspecific amplification products in multiplex PCR
Publication date: Available online 8 September 2020Source: Journal of Microbiological MethodsAuthor(s): Noa Wolff, Andreas F. Geiss, Ivan Barišić (Source: Journal of Microbiological Methods)
Source: Journal of Microbiological Methods - September 9, 2020 Category: Microbiology Source Type: research

A quick flow cytometry protocol to assess helicobacter pylori viability
Publication date: Available online 5 September 2020Source: Journal of Microbiological MethodsAuthor(s): Claudio Alba, Alicia C. Marin, Adrian G. McNicholl, Ana Montalban-Arques, Irene Mora-Gutierrez, Antonio José Sánchez-Arroyo, Tamara Soler, David García-Fresnadillo, Javier P. Gisbert, Teresa Alarcón, David Bernardo (Source: Journal of Microbiological Methods)
Source: Journal of Microbiological Methods - September 7, 2020 Category: Microbiology Source Type: research

Multiplex droplet digital PCR assay for detection of Flavobacterium psychrophilum and Yersinia ruckeri in Norwegian aquaculture
Publication date: Available online 5 September 2020Source: Journal of Microbiological MethodsAuthor(s): Anna S. Lewin, Tone Haugen, Roman Netzer, Anne Tøndervik, Stine W. Dahle, Gunhild Hageskal (Source: Journal of Microbiological Methods)
Source: Journal of Microbiological Methods - September 7, 2020 Category: Microbiology Source Type: research

Sequence-enabled community-based microbial source tracking in surface waters using machine learning classification: A review
Publication date: Available online 4 September 2020Source: Journal of Microbiological MethodsAuthor(s): Prince P. Mathai, Christopher Staley, Michael J. Sadowsky (Source: Journal of Microbiological Methods)
Source: Journal of Microbiological Methods - September 6, 2020 Category: Microbiology Source Type: research

Utilization of multiple microbial tools to evaluate efficacy of restoration strategies to improve recreational water quality at a Lake Michigan Beach (Racine, WI)
Publication date: Available online 4 September 2020Source: Journal of Microbiological MethodsAuthor(s): J. Kinzelman, M.N. Byappanahalli, M.B. Nevers, D. Shively, S. Kurdas, C. Nakatsu (Source: Journal of Microbiological Methods)
Source: Journal of Microbiological Methods - September 6, 2020 Category: Microbiology Source Type: research

Multi fragment melting analysis system (MFMAS) for one-step identification of lactobacilli
Publication date: Available online 3 September 2020Source: Journal of Microbiological MethodsAuthor(s): Zülal Kesmen, Özge Kılıç, Yasin Gormez, Mete Çelik, Burcu Bakir-Gungor (Source: Journal of Microbiological Methods)
Source: Journal of Microbiological Methods - September 3, 2020 Category: Microbiology Source Type: research

Performance evaluation of automated BD Phoenix NMIC-500 panel for carbapenemase detection in carbapenem-resistant and carbapenem-susceptible Enterobacterales
Publication date: Available online 3 September 2020Source: Journal of Microbiological MethodsAuthor(s): Hanwool Cho, Jung Ok Kim, Ji Eun Choi, Howon Lee, Woong Heo, Young Jong Cha, In Young Yoo, Yeon-Joon Park (Source: Journal of Microbiological Methods)
Source: Journal of Microbiological Methods - September 3, 2020 Category: Microbiology Source Type: research

Detection of spore forming Paenibacillus macerans in raw milk
Publication date: Available online 3 September 2020Source: Journal of Microbiological MethodsAuthor(s): Atinuke M. Olajide, Gisèle LaPointe (Source: Journal of Microbiological Methods)
Source: Journal of Microbiological Methods - September 3, 2020 Category: Microbiology Source Type: research

Biotransformation of 12-hydroxystearic acid to gamma-decalactone: Comparison of two separation systems
Publication date: Available online 3 September 2020Source: Journal of Microbiological MethodsAuthor(s): Shaofeng Rong, Xinhui Guan, Qianqian Li, Shimin Guan, Baoguo Cai, Shuo Zhang (Source: Journal of Microbiological Methods)
Source: Journal of Microbiological Methods - September 3, 2020 Category: Microbiology Source Type: research

Editorial Board
Publication date: September 2020Source: Journal of Microbiological Methods, Volume 176Author(s): (Source: Journal of Microbiological Methods)
Source: Journal of Microbiological Methods - August 24, 2020 Category: Microbiology Source Type: research

Five-year cryopreservation at −80 °C of edible and medicinal basidiomycetes by wheat grain technique
Publication date: September 2020Source: Journal of Microbiological Methods, Volume 176Author(s): Lienine Luiz Zaghi Junior, Miria Benetati Delgado Bertéli, Janyeli Dorini Silva de Freitas, Olavo Bilac Quaresma de Oliveira Filho, Ana Daniela Lopes, Suelen Pereira Ruiz, Juliana Silveira do Valle, Giani Andrea Linde, Nelson Barros Colauto (Source: Journal of Microbiological Methods)
Source: Journal of Microbiological Methods - August 19, 2020 Category: Microbiology Source Type: research

A novel image cytometry-based Lactobacillus bacterial enumeration method for the production of kettle sour beer
Publication date: Available online 14 August 2020Source: Journal of Microbiological MethodsAuthor(s): Matthew Hodgkin, Suzanne M. Purseglove, Leo Li-Ying Chan, Jennifer Perry, Jason Bolton (Source: Journal of Microbiological Methods)
Source: Journal of Microbiological Methods - August 15, 2020 Category: Microbiology Source Type: research

Five-year cryopreservation at − 80°C of edible and medicinal basidiomycetes by wheat grain technique
Publication date: Available online 15 August 2020Source: Journal of Microbiological MethodsAuthor(s): Lienine Luiz Zaghi Junior, Miria Benetati Delgado Bertéli, Janyeli Dorini Silva de Freitas, Olavo Bilac Quaresma de Oliveira Filho, Ana Daniela Lopes, Suelen Pereira Ruiz, Juliana Silveira do Valle, Giani Andrea Linde, Nelson Barros Colauto (Source: Journal of Microbiological Methods)
Source: Journal of Microbiological Methods - August 15, 2020 Category: Microbiology Source Type: research

The impact of delayed analysis of positive blood cultures on the performance of short-term culture followed by MALDI-TOF MS
Publication date: Available online 15 August 2020Source: Journal of Microbiological MethodsAuthor(s): Alexander T.A. Johnsson, Alicia Y.W. Wong, Volkan Özenci (Source: Journal of Microbiological Methods)
Source: Journal of Microbiological Methods - August 15, 2020 Category: Microbiology Source Type: research

An efficient genetic transformation system for Chinese medicine fungus Tolypocladium ophioglossoides
Publication date: Available online 15 August 2020Source: Journal of Microbiological MethodsAuthor(s): Xin-ai Chen, Xian He, Min Zhang, Xu-ming Mao, Yong-quan Li (Source: Journal of Microbiological Methods)
Source: Journal of Microbiological Methods - August 15, 2020 Category: Microbiology Source Type: research

Avidity of IgG to Rickettsia prowazekii and the presence of specific IgM in blood sera for retrospective analysis of the 1998 epidemic typhus outbreak in Russia
Publication date: Available online 15 August 2020Source: Journal of Microbiological MethodsAuthor(s): Tatiana Chekanova, Stanislav Shpynov (Source: Journal of Microbiological Methods)
Source: Journal of Microbiological Methods - August 15, 2020 Category: Microbiology Source Type: research