A simple method for the cultivation of the “unculturable” asterinaceous fungi (Asterinales/Dothideomycetes)
Publication date: Available online 21 June 2021Source: Journal of Microbiological MethodsAuthor(s): André Luiz Firmino, Olinto Liparini Pereira (Source: Journal of Microbiological Methods)
Source: Journal of Microbiological Methods - June 21, 2021 Category: Microbiology Source Type: research

Phospholipid fatty acid (PLFA) analysis as a tool to estimate absolute abundances from compositional 16S rRNA bacterial metabarcoding data
Publication date: Available online 17 June 2021Source: Journal of Microbiological MethodsAuthor(s): Natascha Lewe, Syrie Hermans, Gavin Lear, Laura T. Kelly, Georgia Thomson-Laing, Barbara Weisbrod, Susanna A. Wood, Robert A. Keyzers, Julie R. Deslippe (Source: Journal of Microbiological Methods)
Source: Journal of Microbiological Methods - June 17, 2021 Category: Microbiology Source Type: research

A high-throughput virulence screening method for the Ralstonia solanacearum species complex
Publication date: Available online 15 June 2021Source: Journal of Microbiological MethodsAuthor(s): Jeffrey K. Schachterle, Qi Huang (Source: Journal of Microbiological Methods)
Source: Journal of Microbiological Methods - June 16, 2021 Category: Microbiology Source Type: research

A review on application of next-generation sequencing methods for profiling of protozoan parasites in water: Current methodologies, challenges, and perspectives
Publication date: Available online 12 June 2021Source: Journal of Microbiological MethodsAuthor(s): N.P. Mthethwa, I.D. Amoah, P. Reddy, F. Bux, S. Kumari (Source: Journal of Microbiological Methods)
Source: Journal of Microbiological Methods - June 13, 2021 Category: Microbiology Source Type: research

Establishing a quantitative index of meropenem hydrolysis for the detection of KPC- and NDM-producing bacteria by MALDI-TOF MS
Publication date: Available online 9 June 2021Source: Journal of Microbiological MethodsAuthor(s): Camila Mörschbächer Wilhelm, Giovanna de Ross Forni, Maiara dos Santos Carneiro, Afonso Luís Barth (Source: Journal of Microbiological Methods)
Source: Journal of Microbiological Methods - June 10, 2021 Category: Microbiology Source Type: research

CtNorm: Real time PCR cycle of threshold (Ct) normalization algorithm
Publication date: Available online 8 June 2021Source: Journal of Microbiological MethodsAuthor(s): Amin Ramezani (Source: Journal of Microbiological Methods)
Source: Journal of Microbiological Methods - June 9, 2021 Category: Microbiology Source Type: research

Editorial Board
Publication date: July 2021Source: Journal of Microbiological Methods, Volume 186Author(s): (Source: Journal of Microbiological Methods)
Source: Journal of Microbiological Methods - June 9, 2021 Category: Microbiology Source Type: research

Refinement of the Griess method for measuring nitrite in biological samples
Publication date: August 2021Source: Journal of Microbiological Methods, Volume 187Author(s): Naurú Idalia Vargas-Maya, Felipe Padilla-Vaca, Oscar E. Romero-González, Edgar Allan Serguei Rosales-Castillo, Ángeles Rangel-Serrano, Sergio Arias-Negrete, Bernardo Franco (Source: Journal of Microbiological Methods)
Source: Journal of Microbiological Methods - June 6, 2021 Category: Microbiology Source Type: research

Method for screening antimicrobial gels against multi-species oral biofilms
Publication date: Available online 1 June 2021Source: Journal of Microbiological MethodsAuthor(s): Kanchana Chathoth, Bénédicte Martin, Martine Bonnaure-Mallet, Christine Baysse (Source: Journal of Microbiological Methods)
Source: Journal of Microbiological Methods - June 2, 2021 Category: Microbiology Source Type: research

A review of molecular identification tools for the opisthorchioidea
Publication date: Available online 1 June 2021Source: Journal of Microbiological MethodsAuthor(s): Duflot Maureen, Setbon Thomas, Midelet Graziella, Brauge Thomas, Gay Mélanie (Source: Journal of Microbiological Methods)
Source: Journal of Microbiological Methods - June 1, 2021 Category: Microbiology Source Type: research

Make microalgal cultures axenic again – a fast and simple workflow utilizing fluorescence-activated cell sorting
Publication date: Available online 31 May 2021Source: Journal of Microbiological MethodsAuthor(s): Philipp Doppler, Ricarda Kriechbaum, Benedikt Singer, Oliver Spadiut (Source: Journal of Microbiological Methods)
Source: Journal of Microbiological Methods - June 1, 2021 Category: Microbiology Source Type: research

Respiratory bacterial co-infections in intensive care unit-hospitalized COVID-19 patients: Conventional culture vs BioFire FilmArray pneumonia Plus panel
Publication date: Available online 29 May 2021Source: Journal of Microbiological MethodsAuthor(s): Claudio Foschi, Anna Zignoli, Paolo Gaibani, Caterina Vocale, Giada Rossini, Silvia Lafratta, Andrea Liberatore, Gabriele Turello, Tiziana Lazzarotto, Simone Ambretti (Source: Journal of Microbiological Methods)
Source: Journal of Microbiological Methods - May 31, 2021 Category: Microbiology Source Type: research

Assessing the efficiency of low-cost cleaning methods for diatoms from intertidal sediment samples
Publication date: Available online 29 May 2021Source: Journal of Microbiological MethodsAuthor(s): Jéssica C.E. Vilhena, Ana Amorim, Lourenço Ribeiro, Irlon M. Ferreira, Maíra Pombo (Source: Journal of Microbiological Methods)
Source: Journal of Microbiological Methods - May 31, 2021 Category: Microbiology Source Type: research

Rapid preparation of gastrointestinal nematode eggs from faeces for PCR identification
Publication date: Available online 29 May 2021Source: Journal of Microbiological MethodsAuthor(s): Nicole Hedley, D. Grant Richards, Enzo A. Palombo (Source: Journal of Microbiological Methods)
Source: Journal of Microbiological Methods - May 31, 2021 Category: Microbiology Source Type: research

Efficient isolation and cultivation of endosymbiotic Chlorella from Paramecium bursaria on agar plates by co-culture with yeast cells
Publication date: Available online 28 May 2021Source: Journal of Microbiological MethodsAuthor(s): Ippei Maeda, Shou Kudou, Sosuke Iwai (Source: Journal of Microbiological Methods)
Source: Journal of Microbiological Methods - May 28, 2021 Category: Microbiology Source Type: research

Automated antimicrobial susceptibility testing of slow-growing Pseudomonas aeruginosa strains in the presence of tetrazolium salt WST-1
Publication date: Available online 27 May 2021Source: Journal of Microbiological MethodsAuthor(s): Rucha Datar, Guillaume Perrin, Valérie Chalansonnet, Audrey Perry, John D. Perry, Alex van Belkum, Sylvain Orenga (Source: Journal of Microbiological Methods)
Source: Journal of Microbiological Methods - May 27, 2021 Category: Microbiology Source Type: research

Rapid detection and enumeration of aerobic mesophiles in raw foods using dielectrophoresis
Publication date: Available online 24 May 2021Source: Journal of Microbiological MethodsAuthor(s): Umi Ogawa, Kento Koyama, Shigenobu Koseki (Source: Journal of Microbiological Methods)
Source: Journal of Microbiological Methods - May 25, 2021 Category: Microbiology Source Type: research

Editorial Board
Publication date: June 2021Source: Journal of Microbiological Methods, Volume 185Author(s): (Source: Journal of Microbiological Methods)
Source: Journal of Microbiological Methods - May 24, 2021 Category: Microbiology Source Type: research

Effect of different sample treatment methods on Low Endotoxin Recovery Phenomenon
Publication date: July 2021Source: Journal of Microbiological Methods, Volume 186Author(s): Ruixuan Bu, Xinren Deng, Yuan Cao, Jiayi Jin, Binliang Mai, Ke Meng, Xiaohui Liu, Jen-Chih Chi, Yujie Zhang, Frank Qiu (Source: Journal of Microbiological Methods)
Source: Journal of Microbiological Methods - May 24, 2021 Category: Microbiology Source Type: research

Establishment and performance evaluation of multiplex PCR-dipstick DNA chromatography assay for simultaneous diagnosis of four sexually transmitted pathogens
Publication date: Available online 21 May 2021Source: Journal of Microbiological MethodsAuthor(s): Li Luo, Qianming Chen, Qiang Luo, Sheng Qin, Zhenjie Liu, Qiong Li, Xianzhang Huang, Hui Xiao, Ning Xu (Source: Journal of Microbiological Methods)
Source: Journal of Microbiological Methods - May 22, 2021 Category: Microbiology Source Type: research

Comparative study of Legiolert with ISO 11731-1998 standard method-conclusions from a Public Health Laboratory
Publication date: Available online 18 May 2021Source: Journal of Microbiological MethodsAuthor(s): Javier Checa, Iago Carbonell, Neus Manero, Inés Martí (Source: Journal of Microbiological Methods)
Source: Journal of Microbiological Methods - May 19, 2021 Category: Microbiology Source Type: research

Incubation temperature and culture medium formulation impact the accuracy of pour-plate techniques for the enumeration of industrial Bacillus assemblages
Publication date: Available online 13 May 2021Source: Journal of Microbiological MethodsAuthor(s): Taliesin Lenhart, John Gorsuch (Source: Journal of Microbiological Methods)
Source: Journal of Microbiological Methods - May 15, 2021 Category: Microbiology Source Type: research

Effect of different sample treatment methods ron Low Endotoxin Recovery Phenomenon
Publication date: Available online 14 May 2021Source: Journal of Microbiological MethodsAuthor(s): Ruixuan Bu, Xinren Deng, Yuan Cao, Jiayi Jin, Binliang Mai, Ke Meng, Xiaohui Liu, Jen-Chih Chi, Yujie Zhang, Frank Qiu (Source: Journal of Microbiological Methods)
Source: Journal of Microbiological Methods - May 15, 2021 Category: Microbiology Source Type: research

Development and optimization of a TaqMan assay for Nosema bombycis, causative agent of pébrine disease in Bombyx mori silkworm, based on the β-tubulin gene
Publication date: Available online 13 May 2021Source: Journal of Microbiological MethodsAuthor(s): Anupama Jagadish, Diksha Khajje, Merinrose Tony, Anna Nilsson, Joachim R. de Miranda, Olle Terenius, Himanshu Dubey, Rakesh K. Mishra, Kangayam M. Ponnuvel (Source: Journal of Microbiological Methods)
Source: Journal of Microbiological Methods - May 13, 2021 Category: Microbiology Source Type: research

Use of different approaches for the culture-independent typing of Mycoplasma pneumoniae from two geographically distinct regions
Publication date: Available online 13 May 2021Source: Journal of Microbiological MethodsAuthor(s): Roger Dumke, Nadia Rodriguez (Source: Journal of Microbiological Methods)
Source: Journal of Microbiological Methods - May 13, 2021 Category: Microbiology Source Type: research

A novel qPCR based-method for detection and quantification of three recurrent species of Penicillium isolated from bioaerosols in mold-damaged homes
Publication date: Available online 11 May 2021Source: Journal of Microbiological MethodsAuthor(s): A. Géry, A. Delanoë, N. Heutte, E. Chosson, J. Bonhomme, D. Garon (Source: Journal of Microbiological Methods)
Source: Journal of Microbiological Methods - May 11, 2021 Category: Microbiology Source Type: research

Resin cast impressions as a tool for microscopic observations of fungal epiphytes on leaves
Publication date: Available online 11 May 2021Source: Journal of Microbiological MethodsAuthor(s): Cesar U. Valencia, Gregory A. Sword (Source: Journal of Microbiological Methods)
Source: Journal of Microbiological Methods - May 11, 2021 Category: Microbiology Source Type: research

Quantification of biofilm produced by clinical, environment and hands’ isolates Klebsiella species using colorimetric and classical methods
Publication date: June 2021Source: Journal of Microbiological Methods, Volume 185Author(s): Nagela Bernadelli Sousa Silva, Priscila Guerino Vilela Alves, Lara de Andrade Marques, Samuel Fernandes Silva, Gabriel de Oliveira Faria, Lúcio Borges de Araújo, Reginaldo dos Santos Pedroso, Mário Paulo Amante Penatti, Ralciane de Paula Menezes, Denise von Dolinger de Brito Röder (Source: Journal of Microbiological Methods)
Source: Journal of Microbiological Methods - May 11, 2021 Category: Microbiology Source Type: research

Taxonomic annotation of 16S rRNA sequences of pig intestinal samples using MG-RAST and QIIME2 generated different microbiota compositions
Publication date: Available online 8 May 2021Source: Journal of Microbiological MethodsAuthor(s): J. Lima, T. Manning, K.M. Rutherford, E.T. Baima, R.J. Dewhurst, P. Walsh, R. Roehe (Source: Journal of Microbiological Methods)
Source: Journal of Microbiological Methods - May 9, 2021 Category: Microbiology Source Type: research

Method-induced variation in the bacterial cell surface hydrophobicity MATH test
Publication date: Available online 7 May 2021Source: Journal of Microbiological MethodsAuthor(s): Jesús A. Salas-Tovar, Sarai Escobedo-García, Guadalupe I. Olivas, Carlos H. Acosta-Muñiz, Federico Harte, David R. Sepulveda (Source: Journal of Microbiological Methods)
Source: Journal of Microbiological Methods - May 8, 2021 Category: Microbiology Source Type: research

Induction of spontaneous phenotype conversion in Ralstonia solanacearum by addition of iron compounds in liquid medium
Publication date: Available online 6 May 2021Source: Journal of Microbiological MethodsAuthor(s): Hiroki Nakahara, Kento Mori, Taro Mori, Naotaka Matsuzoe (Source: Journal of Microbiological Methods)
Source: Journal of Microbiological Methods - May 7, 2021 Category: Microbiology Source Type: research

Comparative evaluation of the Bruker Biotyper and Vitek MS matrix-assisted laser desorption ionization-time of flight mass spectrometry (MALDI-TOF MS) systems for non-albicans Candida and uncommon yeast isolates
Publication date: Available online 4 May 2021Source: Journal of Microbiological MethodsAuthor(s): Leyla Teke, Ayşe Barış, Banu Bayraktar (Source: Journal of Microbiological Methods)
Source: Journal of Microbiological Methods - May 6, 2021 Category: Microbiology Source Type: research

Assessment of stool collection and storage conditions for in vitro human gut model studies
Publication date: Available online 29 April 2021Source: Journal of Microbiological MethodsAuthor(s): Grace A.I. Newland, Glenn R. Gibson, Frances L. Jackson, Anisha Wijeyesekera (Source: Journal of Microbiological Methods)
Source: Journal of Microbiological Methods - April 30, 2021 Category: Microbiology Source Type: research

Quantification of biofilm produced by clinical, environment and hands' isolates Klebsiella species using colorimetric and classical methods
Publication date: Available online 28 April 2021Source: Journal of Microbiological MethodsAuthor(s): Nagela Bernadelli Sousa Silva, Priscila Guerino Vilela Alves, Lara de Andrade Marques, Samuel Fernandes Silva, Gabriel de Oliveira Faria, Lúcio Borges de Araújo, Reginaldo dos Santos Pedroso, Mário Paulo Amante Penatti, Ralciane de Paula Menezes, Denise von Dolinger de Brito Röder (Source: Journal of Microbiological Methods)
Source: Journal of Microbiological Methods - April 29, 2021 Category: Microbiology Source Type: research

Routine laboratory test enabling the detection of dermatophytes and the identification of Trichophyton rubrum by means of in-house duplex real-time PCR
Publication date: Available online 19 April 2021Source: Journal of Microbiological MethodsAuthor(s): Thomas Pablo, Alexandre Mzabi, Marie Meo, Frédéric Decruyenaere, Monique Perrin (Source: Journal of Microbiological Methods)
Source: Journal of Microbiological Methods - April 20, 2021 Category: Microbiology Source Type: research

A rapid screening method to evaluate acidifying activity by lactic acid bacteria
Publication date: Available online 19 April 2021Source: Journal of Microbiological MethodsAuthor(s): S.C. Ribeiro, M.C. Coelho, C.C.G. Silva (Source: Journal of Microbiological Methods)
Source: Journal of Microbiological Methods - April 20, 2021 Category: Microbiology Source Type: research

Screening for acute disseminated histoplasmosis in HIV disease using urinary antigen detection enzyme immunoassay: A pilot study in Cameroon
Publication date: Available online 18 April 2021Source: Journal of Microbiological MethodsAuthor(s): Marius P. Ngouanom Kuate, Raymond Nyasa, Christine Mandengue, Nicholas Tendongfor, Felix Bongomin, David W. Denning (Source: Journal of Microbiological Methods)
Source: Journal of Microbiological Methods - April 19, 2021 Category: Microbiology Source Type: research

Selective and easy detection of the Porphyromonas gingivalis fimA type II and IV genes by loop-mediated isothermal amplification
Publication date: Available online 18 April 2021Source: Journal of Microbiological MethodsAuthor(s): Masae Kitagawa, Kazuhisa Ouhara, Hiroko Oka, Shinichi Sakamoto, Yuka Yamane, Ayaka Kashiwagi, Rinka Kanamoto, Mutusmi Miyauchi, Kentaro Nagamine (Source: Journal of Microbiological Methods)
Source: Journal of Microbiological Methods - April 19, 2021 Category: Microbiology Source Type: research

A novel technique capable of taking ‘protected’ biopsies for reliable assessment of the distribution of microbiota along the colonic mucosa
Publication date: Available online 17 April 2021Source: Journal of Microbiological MethodsAuthor(s): Floortje Strobbe, Mèlanie V. Bénard, Noortje G. Rossen, Willem M. de Vos, Nitin Kumar, Trevor D. Lawley, Erwin G. Zoetendal, Floor Hugenholtz, Cyriel Y. Ponsioen (Source: Journal of Microbiological Methods)
Source: Journal of Microbiological Methods - April 18, 2021 Category: Microbiology Source Type: research

Development and validation of real-time PCR assays for the detection of Ehrlichia species and E. chaffeensis in clinical specimens
Publication date: Available online 16 April 2021Source: Journal of Microbiological MethodsAuthor(s): Ida H. Chung, Amy L. Austin, Cecilia Y. Kato (Source: Journal of Microbiological Methods)
Source: Journal of Microbiological Methods - April 17, 2021 Category: Microbiology Source Type: research

Fast and automated detection of common carbapenemase genes using multiplex real-time PCR on the BD MAX™ system
Publication date: Available online 16 April 2021Source: Journal of Microbiological MethodsAuthor(s): Katja Probst, Sébastien Boutin, Michael Bandilla, Klaus Heeg, Alexander H. Dalpke (Source: Journal of Microbiological Methods)
Source: Journal of Microbiological Methods - April 17, 2021 Category: Microbiology Source Type: research

Optimization of pre- treatments with Propidium Monoazide and PEMAX™ before real-time quantitative PCR for detection and quantification of viable Helicobacter pylori cells
Publication date: Available online 16 April 2021Source: Journal of Microbiological MethodsAuthor(s): Irene Hortelano, María Yolanda Moreno, Jorge García-Hernández, María Antonia Ferrús (Source: Journal of Microbiological Methods)
Source: Journal of Microbiological Methods - April 17, 2021 Category: Microbiology Source Type: research

Editorial Board
Publication date: May 2021Source: Journal of Microbiological Methods, Volume 184Author(s): (Source: Journal of Microbiological Methods)
Source: Journal of Microbiological Methods - April 17, 2021 Category: Microbiology Source Type: research

A simple and novel method for the production of polyethylene terephthalate containing agar plates for the growth and detection of bacteria able to hydrolyze this plastic
Publication date: Available online 16 April 2021Source: Journal of Microbiological MethodsAuthor(s): Colin Charnock (Source: Journal of Microbiological Methods)
Source: Journal of Microbiological Methods - April 16, 2021 Category: Microbiology Source Type: research

Genomics as a potential tool to unravel the rhizosphere microbiome interactions on plant health
Publication date: Available online 9 April 2021Source: Journal of Microbiological MethodsAuthor(s): P. Priya, B. Aneesh, K. Harikrishnan (Source: Journal of Microbiological Methods)
Source: Journal of Microbiological Methods - April 9, 2021 Category: Microbiology Source Type: research

A highly sensitive and specific method to evaluate viable fungal burden of Aspergillus fumigatus in mice by RT-qPCR for 18S ribosomal RNA
Publication date: Available online 31 March 2021Source: Journal of Microbiological MethodsAuthor(s): Yuuta Ukai, Yuri Nishiyama, Kenichi Okazaki, Hideki Maki, Akira Naito (Source: Journal of Microbiological Methods)
Source: Journal of Microbiological Methods - April 1, 2021 Category: Microbiology Source Type: research

Diversity and composition of gut microbiome of cervical cancer patients: Do results of 16S rRNA sequencing and whole genome sequencing approaches align?
Publication date: Available online 27 March 2021Source: Journal of Microbiological MethodsAuthor(s): Greyson Biegert, Molly B. El Alam, Tatiana Karpinets, Xiaogang Wu, Travis T. Sims, Kyoko Yoshida-Court, Erica J. Lynn, Jingyan Yue, Andrea Delgado Medrano, Joseph Petrosino, Melissa P. Mezzari, Nadim J. Ajami, Travis Solley, Mustapha Ahmed-Kaddar, Ann H. Klopp, Lauren E. Colbert (Source: Journal of Microbiological Methods)
Source: Journal of Microbiological Methods - March 28, 2021 Category: Microbiology Source Type: research

Development and evaluation of a novel quenching probe PCR (GENECUBE) assay for rapidly detecting and distinguishing between Chlamydia pneumoniae and Chlamydia psittaci
Publication date: Available online 26 March 2021Source: Journal of Microbiological MethodsAuthor(s): Kyoko Hisada, Yukio Hida, Naoki Kawabata, Yosuke Kawashima, Yoshihiro Soya, Akihiro Shimada, Masayuki Iwano, Hideki Kimura (Source: Journal of Microbiological Methods)
Source: Journal of Microbiological Methods - March 27, 2021 Category: Microbiology Source Type: research

Impact of DNA extraction methods on 16S rRNA-based profiling of bacterial communities in cheese
Publication date: Available online 25 March 2021Source: Journal of Microbiological MethodsAuthor(s): Markusková Barbora, Minarovičová Jana, Véghová Adriana, Drahovská Hana, Kaclíková Eva (Source: Journal of Microbiological Methods)
Source: Journal of Microbiological Methods - March 26, 2021 Category: Microbiology Source Type: research

Improvement of the detection efficiency of 3M™ molecular detection system for Campylobacter in poultry using nitrogen-doped carbon nanodots
Publication date: Available online 25 March 2021Source: Journal of Microbiological MethodsAuthor(s): Jimyeong Ha, Yeongeun Seo, Eunbee Cho, Seungho Choi, Hojin Kim, Yohan Yoon (Source: Journal of Microbiological Methods)
Source: Journal of Microbiological Methods - March 26, 2021 Category: Microbiology Source Type: research