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Predictor bias in genomic and phenomic selection
Theor Appl Genet. 2023 Oct 25;136(11):235. doi: 10.1007/s00122-023-04479-8.ABSTRACTNIRS of wheat grains as phenomic predictors for grain yield show inflated prediction ability and are biased toward grain protein content. Estimating the breeding value of individuals using genome-wide marker data (genomic prediction) is currently one of the most important drivers of breeding progress in major crops. Recently, phenomic technologies, including remote sensing and aerial hyperspectral imaging of plant canopies, have made it feasible to predict the breeding value of individuals in the absence of genetic marker data. This is commo...
Source: TAG. Theoretical and Applied Genetics - October 25, 2023 Category: Genetics & Stem Cells Authors: Hermann Gregor Dallinger Franziska L öschenberger Herbert Bistrich Christian Ametz Herbert Hetzendorfer Laura Morales Sebastian Michel Hermann Buerstmayr Source Type: research

Fine mapping and candidate gene analysis of a novel fertility restorer gene for C-type cytoplasmic male sterility in maize (Zea mays L.)
In this study, a strong restorer line ZH91 for maize CMS-C was found, and the novel restorer gene named Rf12 in ZH91 had been mapped in a 146 kb physical interval on maize chromosome 2. Using the third-generation high-throughput sequencing (ONT), the whole genome sequence of ZH91 was got, and with integrating the annotation information of the reference genome B73_RefGen_v4 and B73_RefGen_v5, four candidate genes were predicted in ZH91 within the mapping region. Then using gene cloning, stranded specific RNA sequencing, qRT-PCR analysis and subcellular localization, Zm00001d007531 was identified as the most likely candidate...
Source: TAG. Theoretical and Applied Genetics - October 25, 2023 Category: Genetics & Stem Cells Authors: Peng Zhang Zhuofan Zhao Mingmin Zheng Yongming Liu Qunkai Niu Xiaowei Liu Ziwen Shi Hongyang Yi Tao Yu Tingzhao Rong Moju Cao Source Type: research

Exploring horticultural traits and disease resistance in Capsicum baccatum through segmental introgression lines
This study presents the development of a complete collection of SILs and ABs in pepper using Capsicum annuum cv. 'CM334' as the recipient parent and Capsicum baccatum 'PBC81', which displays various agronomically important traits including powdery mildew and anthracnose resistance, as donor parent. Using embryo rescue to overcome abortion in interspecific crosses, and marker-assisted selection with genotyping-in-thousands by sequencing (GT-seq) to develop SILs and ABs containing different segments of the C. baccatum genome, we obtained 63 SILs and 44 ABs, covering 94.8% of the C. baccatum genome. We characterized them for ...
Source: TAG. Theoretical and Applied Genetics - October 25, 2023 Category: Genetics & Stem Cells Authors: Jinkwan Jo Geon Woo Kim Seungki Back Siyoung Jang Youngin Kim Koeun Han Hayoung Choi Seyoung Lee Jin-Kyung Kwon Yong-Jik Lee Byoung-Cheorl Kang Source Type: research

Predictor bias in genomic and phenomic selection
Theor Appl Genet. 2023 Oct 25;136(11):235. doi: 10.1007/s00122-023-04479-8.ABSTRACTNIRS of wheat grains as phenomic predictors for grain yield show inflated prediction ability and are biased toward grain protein content. Estimating the breeding value of individuals using genome-wide marker data (genomic prediction) is currently one of the most important drivers of breeding progress in major crops. Recently, phenomic technologies, including remote sensing and aerial hyperspectral imaging of plant canopies, have made it feasible to predict the breeding value of individuals in the absence of genetic marker data. This is commo...
Source: TAG. Theoretical and Applied Genetics - October 25, 2023 Category: Genetics & Stem Cells Authors: Hermann Gregor Dallinger Franziska L öschenberger Herbert Bistrich Christian Ametz Herbert Hetzendorfer Laura Morales Sebastian Michel Hermann Buerstmayr Source Type: research

Fine mapping and candidate gene analysis of a novel fertility restorer gene for C-type cytoplasmic male sterility in maize (Zea mays L.)
In this study, a strong restorer line ZH91 for maize CMS-C was found, and the novel restorer gene named Rf12 in ZH91 had been mapped in a 146 kb physical interval on maize chromosome 2. Using the third-generation high-throughput sequencing (ONT), the whole genome sequence of ZH91 was got, and with integrating the annotation information of the reference genome B73_RefGen_v4 and B73_RefGen_v5, four candidate genes were predicted in ZH91 within the mapping region. Then using gene cloning, stranded specific RNA sequencing, qRT-PCR analysis and subcellular localization, Zm00001d007531 was identified as the most likely candidate...
Source: TAG. Theoretical and Applied Genetics - October 25, 2023 Category: Genetics & Stem Cells Authors: Peng Zhang Zhuofan Zhao Mingmin Zheng Yongming Liu Qunkai Niu Xiaowei Liu Ziwen Shi Hongyang Yi Tao Yu Tingzhao Rong Moju Cao Source Type: research

Exploring horticultural traits and disease resistance in Capsicum baccatum through segmental introgression lines
This study presents the development of a complete collection of SILs and ABs in pepper using Capsicum annuum cv. 'CM334' as the recipient parent and Capsicum baccatum 'PBC81', which displays various agronomically important traits including powdery mildew and anthracnose resistance, as donor parent. Using embryo rescue to overcome abortion in interspecific crosses, and marker-assisted selection with genotyping-in-thousands by sequencing (GT-seq) to develop SILs and ABs containing different segments of the C. baccatum genome, we obtained 63 SILs and 44 ABs, covering 94.8% of the C. baccatum genome. We characterized them for ...
Source: TAG. Theoretical and Applied Genetics - October 25, 2023 Category: Genetics & Stem Cells Authors: Jinkwan Jo Geon Woo Kim Seungki Back Siyoung Jang Youngin Kim Koeun Han Hayoung Choi Seyoung Lee Jin-Kyung Kwon Yong-Jik Lee Byoung-Cheorl Kang Source Type: research

Predictor bias in genomic and phenomic selection
Theor Appl Genet. 2023 Oct 25;136(11):235. doi: 10.1007/s00122-023-04479-8.ABSTRACTNIRS of wheat grains as phenomic predictors for grain yield show inflated prediction ability and are biased toward grain protein content. Estimating the breeding value of individuals using genome-wide marker data (genomic prediction) is currently one of the most important drivers of breeding progress in major crops. Recently, phenomic technologies, including remote sensing and aerial hyperspectral imaging of plant canopies, have made it feasible to predict the breeding value of individuals in the absence of genetic marker data. This is commo...
Source: TAG. Theoretical and Applied Genetics - October 25, 2023 Category: Genetics & Stem Cells Authors: Hermann Gregor Dallinger Franziska L öschenberger Herbert Bistrich Christian Ametz Herbert Hetzendorfer Laura Morales Sebastian Michel Hermann Buerstmayr Source Type: research

Fine mapping and candidate gene analysis of a novel fertility restorer gene for C-type cytoplasmic male sterility in maize (Zea mays L.)
In this study, a strong restorer line ZH91 for maize CMS-C was found, and the novel restorer gene named Rf12 in ZH91 had been mapped in a 146 kb physical interval on maize chromosome 2. Using the third-generation high-throughput sequencing (ONT), the whole genome sequence of ZH91 was got, and with integrating the annotation information of the reference genome B73_RefGen_v4 and B73_RefGen_v5, four candidate genes were predicted in ZH91 within the mapping region. Then using gene cloning, stranded specific RNA sequencing, qRT-PCR analysis and subcellular localization, Zm00001d007531 was identified as the most likely candidate...
Source: TAG. Theoretical and Applied Genetics - October 25, 2023 Category: Genetics & Stem Cells Authors: Peng Zhang Zhuofan Zhao Mingmin Zheng Yongming Liu Qunkai Niu Xiaowei Liu Ziwen Shi Hongyang Yi Tao Yu Tingzhao Rong Moju Cao Source Type: research

Exploring horticultural traits and disease resistance in Capsicum baccatum through segmental introgression lines
This study presents the development of a complete collection of SILs and ABs in pepper using Capsicum annuum cv. 'CM334' as the recipient parent and Capsicum baccatum 'PBC81', which displays various agronomically important traits including powdery mildew and anthracnose resistance, as donor parent. Using embryo rescue to overcome abortion in interspecific crosses, and marker-assisted selection with genotyping-in-thousands by sequencing (GT-seq) to develop SILs and ABs containing different segments of the C. baccatum genome, we obtained 63 SILs and 44 ABs, covering 94.8% of the C. baccatum genome. We characterized them for ...
Source: TAG. Theoretical and Applied Genetics - October 25, 2023 Category: Genetics & Stem Cells Authors: Jinkwan Jo Geon Woo Kim Seungki Back Siyoung Jang Youngin Kim Koeun Han Hayoung Choi Seyoung Lee Jin-Kyung Kwon Yong-Jik Lee Byoung-Cheorl Kang Source Type: research

Predictor bias in genomic and phenomic selection
Theor Appl Genet. 2023 Oct 25;136(11):235. doi: 10.1007/s00122-023-04479-8.ABSTRACTNIRS of wheat grains as phenomic predictors for grain yield show inflated prediction ability and are biased toward grain protein content. Estimating the breeding value of individuals using genome-wide marker data (genomic prediction) is currently one of the most important drivers of breeding progress in major crops. Recently, phenomic technologies, including remote sensing and aerial hyperspectral imaging of plant canopies, have made it feasible to predict the breeding value of individuals in the absence of genetic marker data. This is commo...
Source: TAG. Theoretical and Applied Genetics - October 25, 2023 Category: Genetics & Stem Cells Authors: Hermann Gregor Dallinger Franziska L öschenberger Herbert Bistrich Christian Ametz Herbert Hetzendorfer Laura Morales Sebastian Michel Hermann Buerstmayr Source Type: research

Fine mapping and candidate gene analysis of a novel fertility restorer gene for C-type cytoplasmic male sterility in maize (Zea mays L.)
In this study, a strong restorer line ZH91 for maize CMS-C was found, and the novel restorer gene named Rf12 in ZH91 had been mapped in a 146 kb physical interval on maize chromosome 2. Using the third-generation high-throughput sequencing (ONT), the whole genome sequence of ZH91 was got, and with integrating the annotation information of the reference genome B73_RefGen_v4 and B73_RefGen_v5, four candidate genes were predicted in ZH91 within the mapping region. Then using gene cloning, stranded specific RNA sequencing, qRT-PCR analysis and subcellular localization, Zm00001d007531 was identified as the most likely candidate...
Source: TAG. Theoretical and Applied Genetics - October 25, 2023 Category: Genetics & Stem Cells Authors: Peng Zhang Zhuofan Zhao Mingmin Zheng Yongming Liu Qunkai Niu Xiaowei Liu Ziwen Shi Hongyang Yi Tao Yu Tingzhao Rong Moju Cao Source Type: research

Exploring horticultural traits and disease resistance in Capsicum baccatum through segmental introgression lines
This study presents the development of a complete collection of SILs and ABs in pepper using Capsicum annuum cv. 'CM334' as the recipient parent and Capsicum baccatum 'PBC81', which displays various agronomically important traits including powdery mildew and anthracnose resistance, as donor parent. Using embryo rescue to overcome abortion in interspecific crosses, and marker-assisted selection with genotyping-in-thousands by sequencing (GT-seq) to develop SILs and ABs containing different segments of the C. baccatum genome, we obtained 63 SILs and 44 ABs, covering 94.8% of the C. baccatum genome. We characterized them for ...
Source: TAG. Theoretical and Applied Genetics - October 25, 2023 Category: Genetics & Stem Cells Authors: Jinkwan Jo Geon Woo Kim Seungki Back Siyoung Jang Youngin Kim Koeun Han Hayoung Choi Seyoung Lee Jin-Kyung Kwon Yong-Jik Lee Byoung-Cheorl Kang Source Type: research

Predictor bias in genomic and phenomic selection
Theor Appl Genet. 2023 Oct 25;136(11):235. doi: 10.1007/s00122-023-04479-8.ABSTRACTNIRS of wheat grains as phenomic predictors for grain yield show inflated prediction ability and are biased toward grain protein content. Estimating the breeding value of individuals using genome-wide marker data (genomic prediction) is currently one of the most important drivers of breeding progress in major crops. Recently, phenomic technologies, including remote sensing and aerial hyperspectral imaging of plant canopies, have made it feasible to predict the breeding value of individuals in the absence of genetic marker data. This is commo...
Source: TAG. Theoretical and Applied Genetics - October 25, 2023 Category: Genetics & Stem Cells Authors: Hermann Gregor Dallinger Franziska L öschenberger Herbert Bistrich Christian Ametz Herbert Hetzendorfer Laura Morales Sebastian Michel Hermann Buerstmayr Source Type: research

Fine mapping and candidate gene analysis of a novel fertility restorer gene for C-type cytoplasmic male sterility in maize (Zea mays L.)
In this study, a strong restorer line ZH91 for maize CMS-C was found, and the novel restorer gene named Rf12 in ZH91 had been mapped in a 146 kb physical interval on maize chromosome 2. Using the third-generation high-throughput sequencing (ONT), the whole genome sequence of ZH91 was got, and with integrating the annotation information of the reference genome B73_RefGen_v4 and B73_RefGen_v5, four candidate genes were predicted in ZH91 within the mapping region. Then using gene cloning, stranded specific RNA sequencing, qRT-PCR analysis and subcellular localization, Zm00001d007531 was identified as the most likely candidate...
Source: TAG. Theoretical and Applied Genetics - October 25, 2023 Category: Genetics & Stem Cells Authors: Peng Zhang Zhuofan Zhao Mingmin Zheng Yongming Liu Qunkai Niu Xiaowei Liu Ziwen Shi Hongyang Yi Tao Yu Tingzhao Rong Moju Cao Source Type: research

Genetic control and prospects of predictive breeding for European winter wheat's Zeleny sedimentation values and Hagberg-Perten falling number
We report novel candidate loci associated with globulins and albumins-the non-gluten monomeric proteins in wheat. In addition, predictive breeding analyses for ZSV and HFN suggest using genomic selection in the early stages of breeding programs with an average prediction accuracy of 81 and 59%, respectively.PMID:37874400 | PMC:PMC10598174 | DOI:10.1007/s00122-023-04450-7 (Source: TAG. Theoretical and Applied Genetics)
Source: TAG. Theoretical and Applied Genetics - October 24, 2023 Category: Genetics & Stem Cells Authors: Quddoos H Muqaddasi Roop Kamal Muqaddasi Erhard Ebmeyer Viktor Korzun Odile Argillier Vilson Mirdita Jochen C Reif Martin W Ganal Marion S R öder Source Type: research