[ASAP] Data-Driven and Machine Learning-Based Framework for Image-Guided Single-Cell Mass Spectrometry
Journal of Proteome ResearchDOI: 10.1021/acs.jproteome.2c00714 (Source: Journal of Proteome Research)
Source: Journal of Proteome Research - January 25, 2023 Category: Biochemistry Authors: Yuxuan Richard Xie, Varsha K. Chari, Daniel C. Castro, Romans Grant, Stanislav S. Rubakhin, and Jonathan V. Sweedler Source Type: research
[ASAP] The Deuterium Calculator: An Open-Source Tool for Hydrogen –Deuterium Exchange Mass Spectrometry Analysis
Journal of Proteome ResearchDOI: 10.1021/acs.jproteome.2c00558 (Source: Journal of Proteome Research)
Source: Journal of Proteome Research - January 25, 2023 Category: Biochemistry Authors: Kellye A. Cupp-Sutton, Thomas Welborn, Mulin Fang, Joel B. Langford, Zhe Wang, Kenneth Smith, and Si Wu Source Type: research
[ASAP] ProteomicsML: An Online Platform for Community-Curated Data sets and Tutorials for Machine Learning in Proteomics
Journal of Proteome ResearchDOI: 10.1021/acs.jproteome.2c00629 (Source: Journal of Proteome Research)
Source: Journal of Proteome Research - January 24, 2023 Category: Biochemistry Authors: Tobias G. Rehfeldt, Ralf Gabriels, Robbin Bouwmeester, Siegfried Gessulat, Benjamin A. Neely, Magnus Palmblad, Yasset Perez-Riverol ⊗, Tobias Schmidt, Juan Antonio Vizcaíno⊗, and Eric W. Deutsch Source Type: research
[ASAP] Retention Time Alignment for Protein Turnover Studies Using Heavy Water Metabolic Labeling
Journal of Proteome ResearchDOI: 10.1021/acs.jproteome.2c00592 (Source: Journal of Proteome Research)
Source: Journal of Proteome Research - January 24, 2023 Category: Biochemistry Authors: Henock M. Deberneh and Rovshan G. Sadygov Source Type: research
[ASAP] MS Ana: Improving Sensitivity in Peptide Identification with Spectral Library Search
Journal of Proteome ResearchDOI: 10.1021/acs.jproteome.2c00658 (Source: Journal of Proteome Research)
Source: Journal of Proteome Research - January 23, 2023 Category: Biochemistry Authors: Sebastian Dorl, Stephan Winkler, Karl Mechtler, and Viktoria Dorfer Source Type: research
[ASAP] MetaProD: A Highly-Configurable Mass Spectrometry Analyzer for Multiplexed Proteomic and Metaproteomic Data
Journal of Proteome ResearchDOI: 10.1021/acs.jproteome.2c00614 (Source: Journal of Proteome Research)
Source: Journal of Proteome Research - January 23, 2023 Category: Biochemistry Authors: Jamie Canderan, Moses Stamboulian, and Yuzhen Ye Source Type: research
[ASAP] AlacatDesigner Computational Design of Peptide Concatamers for Protein Quantitation
Journal of Proteome ResearchDOI: 10.1021/acs.jproteome.2c00608 (Source: Journal of Proteome Research)
Source: Journal of Proteome Research - January 23, 2023 Category: Biochemistry Authors: Martin Rusilowicz, David W. Newman, Declan R. Creamer, James Johnson, Kareena Adair, Victoria M. Harman, Chris M. Grant, Robert J. Beynon, and Simon J. Hubbard Source Type: research
[ASAP] Unified and Standardized Mass Spectrometry Data Processing in Python Using spectrum_utils
Journal of Proteome ResearchDOI: 10.1021/acs.jproteome.2c00632 (Source: Journal of Proteome Research)
Source: Journal of Proteome Research - January 23, 2023 Category: Biochemistry Authors: Wout Bittremieux, Lev Levitsky, Matteo Pilz, Timo Sachsenberg, Florian Huber, Mingxun Wang, and Pieter C. Dorrestein Source Type: research
[ASAP] Semisupervised Machine Learning for Sensitive Open Modification Spectral Library Searching
Journal of Proteome ResearchDOI: 10.1021/acs.jproteome.2c00616 (Source: Journal of Proteome Research)
Source: Journal of Proteome Research - January 23, 2023 Category: Biochemistry Authors: Issar Arab, William E. Fondrie, Kris Laukens, and Wout Bittremieux Source Type: research
[ASAP] PrIntMap-R: An Online Application for Intraprotein Intensity and Peptide Visualization from Bottom-Up Proteomics
Journal of Proteome ResearchDOI: 10.1021/acs.jproteome.2c00606 (Source: Journal of Proteome Research)
Source: Journal of Proteome Research - January 18, 2023 Category: Biochemistry Authors: Simon D. Weaver, Christine M. DeRosa, Sadie R. Schultz, and Matthew M. Champion Source Type: research
[ASAP] Proteomic Characterization of Peritoneal Extracellular Vesicles in a Mouse Model of Peritoneal Fibrosis
Journal of Proteome ResearchDOI: 10.1021/acs.jproteome.2c00713 (Source: Journal of Proteome Research)
Source: Journal of Proteome Research - January 17, 2023 Category: Biochemistry Authors: Qiang Huang, Yuxiang Sun, Juan Sun, Long Peng, Hongli Shang, Dandan Wei, Canming Li, Zhaoyong Hu, and Hui Peng Source Type: research
[ASAP] Trans-Proteomic Pipeline: Robust Mass Spectrometry-Based Proteomics Data Analysis Suite
Journal of Proteome ResearchDOI: 10.1021/acs.jproteome.2c00624 (Source: Journal of Proteome Research)
Source: Journal of Proteome Research - January 17, 2023 Category: Biochemistry Authors: Eric W. Deutsch, Luis Mendoza, David D. Shteynberg, Michael R. Hoopmann, Zhi Sun, Jimmy K. Eng, and Robert L. Moritz Source Type: research
[ASAP] Quality Control for the Target Decoy Approach for Peptide Identification
Journal of Proteome ResearchDOI: 10.1021/acs.jproteome.2c00423 (Source: Journal of Proteome Research)
Source: Journal of Proteome Research - January 17, 2023 Category: Biochemistry Authors: Elke Debrie, Milan Malfait, Ralf Gabriels, Arthur Declerq, Adriaan Sticker, Lennart Martens, and Lieven Clement Source Type: research
[ASAP] Efficient Indexing of Peptides for Database Search Using Tide
Journal of Proteome ResearchDOI: 10.1021/acs.jproteome.2c00617 (Source: Journal of Proteome Research)
Source: Journal of Proteome Research - January 12, 2023 Category: Biochemistry Authors: Frank Lawrence Nii Adoquaye Acquaye, Attila Kertesz-Farkas, and William Stafford Noble Source Type: research
[ASAP] TopPICR: A Companion R Package for Top-Down Proteomics Data Analysis
Journal of Proteome ResearchDOI: 10.1021/acs.jproteome.2c00570 (Source: Journal of Proteome Research)
Source: Journal of Proteome Research - January 11, 2023 Category: Biochemistry Authors: Evan A. Martin, James M. Fulcher, Mowei Zhou, Matthew E. Monroe, and Vladislav A. Petyuk Source Type: research
