The formate dehydrogenase enhances aluminum tolerance of tobacco
This study aims to ascertain GmFDH function in conferring tolerance to aluminum (Al) stress. The bioinformatics analysis demonstrates that GmFDH from Tamba black soybean (TBS) encodes FDH. Quantitative reverse transcription-PCR (qRT-PCR) showed that GmFDH expression was induced by Al stress with a concentration-time-specific pattern. Moreover, Al stress promotes formate content and activates FDH activity. Further studies revealed that GmFDH overexpression alleviated root growth of tobacco under Al stress inhibition and reduced Al and ROS accumulation in roots. In addition, transgenic tobacco had much more root citrate exud...
Source: Journal of Genetics - October 18, 2023 Category: Genetics & Stem Cells Authors: Yonghong Xie Yunmin Wei Rongrong Han Shitian Yu Hui Xu Caode Jiang Yongxiong Yu Source Type: research

AICRF: ancestry inference of admixed population with deep conditional random field
In this study, we first present a heuristic function to determine a proper window length for LAI methods. This heuristic is based on the distance between the ancestral populations of admixed individuals. Then we introduce a method for ancestry inference of admixed population with deep conditional random field (AICRF). AICRF uses a conditional random field (CRF) parameterized by probable extreme learning machines (PELMs) trained on reference panels where PELM is a novel probabilistic ELM classifier. This method does not require many statistical or biological parameters. We evaluate the performance of AICRF in comparison wit...
Source: Journal of Genetics - October 18, 2023 Category: Genetics & Stem Cells Authors: Farhad Alizadeh Hamid Jazayeriy Omid Jazayeri Fatemeh Vafaee Source Type: research

The formate dehydrogenase enhances aluminum tolerance of tobacco
This study aims to ascertain GmFDH function in conferring tolerance to aluminum (Al) stress. The bioinformatics analysis demonstrates that GmFDH from Tamba black soybean (TBS) encodes FDH. Quantitative reverse transcription-PCR (qRT-PCR) showed that GmFDH expression was induced by Al stress with a concentration-time-specific pattern. Moreover, Al stress promotes formate content and activates FDH activity. Further studies revealed that GmFDH overexpression alleviated root growth of tobacco under Al stress inhibition and reduced Al and ROS accumulation in roots. In addition, transgenic tobacco had much more root citrate exud...
Source: Journal of Genetics - October 18, 2023 Category: Genetics & Stem Cells Authors: Yonghong Xie Yunmin Wei Rongrong Han Shitian Yu Hui Xu Caode Jiang Yongxiong Yu Source Type: research

AICRF: ancestry inference of admixed population with deep conditional random field
In this study, we first present a heuristic function to determine a proper window length for LAI methods. This heuristic is based on the distance between the ancestral populations of admixed individuals. Then we introduce a method for ancestry inference of admixed population with deep conditional random field (AICRF). AICRF uses a conditional random field (CRF) parameterized by probable extreme learning machines (PELMs) trained on reference panels where PELM is a novel probabilistic ELM classifier. This method does not require many statistical or biological parameters. We evaluate the performance of AICRF in comparison wit...
Source: Journal of Genetics - October 18, 2023 Category: Genetics & Stem Cells Authors: Farhad Alizadeh Hamid Jazayeriy Omid Jazayeri Fatemeh Vafaee Source Type: research

The formate dehydrogenase enhances aluminum tolerance of tobacco
This study aims to ascertain GmFDH function in conferring tolerance to aluminum (Al) stress. The bioinformatics analysis demonstrates that GmFDH from Tamba black soybean (TBS) encodes FDH. Quantitative reverse transcription-PCR (qRT-PCR) showed that GmFDH expression was induced by Al stress with a concentration-time-specific pattern. Moreover, Al stress promotes formate content and activates FDH activity. Further studies revealed that GmFDH overexpression alleviated root growth of tobacco under Al stress inhibition and reduced Al and ROS accumulation in roots. In addition, transgenic tobacco had much more root citrate exud...
Source: Journal of Genetics - October 18, 2023 Category: Genetics & Stem Cells Authors: Yonghong Xie Yunmin Wei Rongrong Han Shitian Yu Hui Xu Caode Jiang Yongxiong Yu Source Type: research

AICRF: ancestry inference of admixed population with deep conditional random field
In this study, we first present a heuristic function to determine a proper window length for LAI methods. This heuristic is based on the distance between the ancestral populations of admixed individuals. Then we introduce a method for ancestry inference of admixed population with deep conditional random field (AICRF). AICRF uses a conditional random field (CRF) parameterized by probable extreme learning machines (PELMs) trained on reference panels where PELM is a novel probabilistic ELM classifier. This method does not require many statistical or biological parameters. We evaluate the performance of AICRF in comparison wit...
Source: Journal of Genetics - October 18, 2023 Category: Genetics & Stem Cells Authors: Farhad Alizadeh Hamid Jazayeriy Omid Jazayeri Fatemeh Vafaee Source Type: research

The formate dehydrogenase enhances aluminum tolerance of tobacco
This study aims to ascertain GmFDH function in conferring tolerance to aluminum (Al) stress. The bioinformatics analysis demonstrates that GmFDH from Tamba black soybean (TBS) encodes FDH. Quantitative reverse transcription-PCR (qRT-PCR) showed that GmFDH expression was induced by Al stress with a concentration-time-specific pattern. Moreover, Al stress promotes formate content and activates FDH activity. Further studies revealed that GmFDH overexpression alleviated root growth of tobacco under Al stress inhibition and reduced Al and ROS accumulation in roots. In addition, transgenic tobacco had much more root citrate exud...
Source: Journal of Genetics - October 18, 2023 Category: Genetics & Stem Cells Authors: Yonghong Xie Yunmin Wei Rongrong Han Shitian Yu Hui Xu Caode Jiang Yongxiong Yu Source Type: research

AICRF: ancestry inference of admixed population with deep conditional random field
In this study, we first present a heuristic function to determine a proper window length for LAI methods. This heuristic is based on the distance between the ancestral populations of admixed individuals. Then we introduce a method for ancestry inference of admixed population with deep conditional random field (AICRF). AICRF uses a conditional random field (CRF) parameterized by probable extreme learning machines (PELMs) trained on reference panels where PELM is a novel probabilistic ELM classifier. This method does not require many statistical or biological parameters. We evaluate the performance of AICRF in comparison wit...
Source: Journal of Genetics - October 18, 2023 Category: Genetics & Stem Cells Authors: Farhad Alizadeh Hamid Jazayeriy Omid Jazayeri Fatemeh Vafaee Source Type: research

The formate dehydrogenase enhances aluminum tolerance of tobacco
This study aims to ascertain GmFDH function in conferring tolerance to aluminum (Al) stress. The bioinformatics analysis demonstrates that GmFDH from Tamba black soybean (TBS) encodes FDH. Quantitative reverse transcription-PCR (qRT-PCR) showed that GmFDH expression was induced by Al stress with a concentration-time-specific pattern. Moreover, Al stress promotes formate content and activates FDH activity. Further studies revealed that GmFDH overexpression alleviated root growth of tobacco under Al stress inhibition and reduced Al and ROS accumulation in roots. In addition, transgenic tobacco had much more root citrate exud...
Source: Journal of Genetics - October 18, 2023 Category: Genetics & Stem Cells Authors: Yonghong Xie Yunmin Wei Rongrong Han Shitian Yu Hui Xu Caode Jiang Yongxiong Yu Source Type: research

AICRF: ancestry inference of admixed population with deep conditional random field
In this study, we first present a heuristic function to determine a proper window length for LAI methods. This heuristic is based on the distance between the ancestral populations of admixed individuals. Then we introduce a method for ancestry inference of admixed population with deep conditional random field (AICRF). AICRF uses a conditional random field (CRF) parameterized by probable extreme learning machines (PELMs) trained on reference panels where PELM is a novel probabilistic ELM classifier. This method does not require many statistical or biological parameters. We evaluate the performance of AICRF in comparison wit...
Source: Journal of Genetics - October 18, 2023 Category: Genetics & Stem Cells Authors: Farhad Alizadeh Hamid Jazayeriy Omid Jazayeri Fatemeh Vafaee Source Type: research

The formate dehydrogenase enhances aluminum tolerance of tobacco
This study aims to ascertain GmFDH function in conferring tolerance to aluminum (Al) stress. The bioinformatics analysis demonstrates that GmFDH from Tamba black soybean (TBS) encodes FDH. Quantitative reverse transcription-PCR (qRT-PCR) showed that GmFDH expression was induced by Al stress with a concentration-time-specific pattern. Moreover, Al stress promotes formate content and activates FDH activity. Further studies revealed that GmFDH overexpression alleviated root growth of tobacco under Al stress inhibition and reduced Al and ROS accumulation in roots. In addition, transgenic tobacco had much more root citrate exud...
Source: Journal of Genetics - October 18, 2023 Category: Genetics & Stem Cells Authors: Yonghong Xie Yunmin Wei Rongrong Han Shitian Yu Hui Xu Caode Jiang Yongxiong Yu Source Type: research

AICRF: ancestry inference of admixed population with deep conditional random field
In this study, we first present a heuristic function to determine a proper window length for LAI methods. This heuristic is based on the distance between the ancestral populations of admixed individuals. Then we introduce a method for ancestry inference of admixed population with deep conditional random field (AICRF). AICRF uses a conditional random field (CRF) parameterized by probable extreme learning machines (PELMs) trained on reference panels where PELM is a novel probabilistic ELM classifier. This method does not require many statistical or biological parameters. We evaluate the performance of AICRF in comparison wit...
Source: Journal of Genetics - October 18, 2023 Category: Genetics & Stem Cells Authors: Farhad Alizadeh Hamid Jazayeriy Omid Jazayeri Fatemeh Vafaee Source Type: research

The formate dehydrogenase enhances aluminum tolerance of tobacco
This study aims to ascertain GmFDH function in conferring tolerance to aluminum (Al) stress. The bioinformatics analysis demonstrates that GmFDH from Tamba black soybean (TBS) encodes FDH. Quantitative reverse transcription-PCR (qRT-PCR) showed that GmFDH expression was induced by Al stress with a concentration-time-specific pattern. Moreover, Al stress promotes formate content and activates FDH activity. Further studies revealed that GmFDH overexpression alleviated root growth of tobacco under Al stress inhibition and reduced Al and ROS accumulation in roots. In addition, transgenic tobacco had much more root citrate exud...
Source: Journal of Genetics - October 18, 2023 Category: Genetics & Stem Cells Authors: Yonghong Xie Yunmin Wei Rongrong Han Shitian Yu Hui Xu Caode Jiang Yongxiong Yu Source Type: research

AICRF: ancestry inference of admixed population with deep conditional random field
In this study, we first present a heuristic function to determine a proper window length for LAI methods. This heuristic is based on the distance between the ancestral populations of admixed individuals. Then we introduce a method for ancestry inference of admixed population with deep conditional random field (AICRF). AICRF uses a conditional random field (CRF) parameterized by probable extreme learning machines (PELMs) trained on reference panels where PELM is a novel probabilistic ELM classifier. This method does not require many statistical or biological parameters. We evaluate the performance of AICRF in comparison wit...
Source: Journal of Genetics - October 18, 2023 Category: Genetics & Stem Cells Authors: Farhad Alizadeh Hamid Jazayeriy Omid Jazayeri Fatemeh Vafaee Source Type: research

The formate dehydrogenase enhances aluminum tolerance of tobacco
This study aims to ascertain GmFDH function in conferring tolerance to aluminum (Al) stress. The bioinformatics analysis demonstrates that GmFDH from Tamba black soybean (TBS) encodes FDH. Quantitative reverse transcription-PCR (qRT-PCR) showed that GmFDH expression was induced by Al stress with a concentration-time-specific pattern. Moreover, Al stress promotes formate content and activates FDH activity. Further studies revealed that GmFDH overexpression alleviated root growth of tobacco under Al stress inhibition and reduced Al and ROS accumulation in roots. In addition, transgenic tobacco had much more root citrate exud...
Source: Journal of Genetics - October 18, 2023 Category: Genetics & Stem Cells Authors: Yonghong Xie Yunmin Wei Rongrong Han Shitian Yu Hui Xu Caode Jiang Yongxiong Yu Source Type: research