Chloroplast genome of Justicia procumbens: genomic features, comparative analysis, and phylogenetic relationships among Justicieae species
This study provides valuable genetic information to support further research on the genetic diversity and evolutionary development of the tribe Justicieae.PMID:38133708 | DOI:10.1007/s13353-023-00812-5 (Source: J Appl Genet)
Source: J Appl Genet - December 22, 2023 Category: Genetics & Stem Cells Authors: Wei Wang Tao Xu Haibo Lu Guosi Li Leilei Gao Dong Liu Bangxing Han Shanyong Yi Source Type: research

Chloroplast genome of Justicia procumbens: genomic features, comparative analysis, and phylogenetic relationships among Justicieae species
This study provides valuable genetic information to support further research on the genetic diversity and evolutionary development of the tribe Justicieae.PMID:38133708 | DOI:10.1007/s13353-023-00812-5 (Source: J Appl Genet)
Source: J Appl Genet - December 22, 2023 Category: Genetics & Stem Cells Authors: Wei Wang Tao Xu Haibo Lu Guosi Li Leilei Gao Dong Liu Bangxing Han Shanyong Yi Source Type: research

Chloroplast genome of Justicia procumbens: genomic features, comparative analysis, and phylogenetic relationships among Justicieae species
This study provides valuable genetic information to support further research on the genetic diversity and evolutionary development of the tribe Justicieae.PMID:38133708 | DOI:10.1007/s13353-023-00812-5 (Source: J Appl Genet)
Source: J Appl Genet - December 22, 2023 Category: Genetics & Stem Cells Authors: Wei Wang Tao Xu Haibo Lu Guosi Li Leilei Gao Dong Liu Bangxing Han Shanyong Yi Source Type: research

Chloroplast genome of Justicia procumbens: genomic features, comparative analysis, and phylogenetic relationships among Justicieae species
This study provides valuable genetic information to support further research on the genetic diversity and evolutionary development of the tribe Justicieae.PMID:38133708 | DOI:10.1007/s13353-023-00812-5 (Source: J Appl Genet)
Source: J Appl Genet - December 22, 2023 Category: Genetics & Stem Cells Authors: Wei Wang Tao Xu Haibo Lu Guosi Li Leilei Gao Dong Liu Bangxing Han Shanyong Yi Source Type: research

Chloroplast genome of Justicia procumbens: genomic features, comparative analysis, and phylogenetic relationships among Justicieae species
This study provides valuable genetic information to support further research on the genetic diversity and evolutionary development of the tribe Justicieae.PMID:38133708 | DOI:10.1007/s13353-023-00812-5 (Source: J Appl Genet)
Source: J Appl Genet - December 22, 2023 Category: Genetics & Stem Cells Authors: Wei Wang Tao Xu Haibo Lu Guosi Li Leilei Gao Dong Liu Bangxing Han Shanyong Yi Source Type: research

Chloroplast genome of Justicia procumbens: genomic features, comparative analysis, and phylogenetic relationships among Justicieae species
This study provides valuable genetic information to support further research on the genetic diversity and evolutionary development of the tribe Justicieae.PMID:38133708 | DOI:10.1007/s13353-023-00812-5 (Source: J Appl Genet)
Source: J Appl Genet - December 22, 2023 Category: Genetics & Stem Cells Authors: Wei Wang Tao Xu Haibo Lu Guosi Li Leilei Gao Dong Liu Bangxing Han Shanyong Yi Source Type: research

Chloroplast genome of Justicia procumbens: genomic features, comparative analysis, and phylogenetic relationships among Justicieae species
This study provides valuable genetic information to support further research on the genetic diversity and evolutionary development of the tribe Justicieae.PMID:38133708 | DOI:10.1007/s13353-023-00812-5 (Source: J Appl Genet)
Source: J Appl Genet - December 22, 2023 Category: Genetics & Stem Cells Authors: Wei Wang Tao Xu Haibo Lu Guosi Li Leilei Gao Dong Liu Bangxing Han Shanyong Yi Source Type: research

Chloroplast genome of Justicia procumbens: genomic features, comparative analysis, and phylogenetic relationships among Justicieae species
This study provides valuable genetic information to support further research on the genetic diversity and evolutionary development of the tribe Justicieae.PMID:38133708 | DOI:10.1007/s13353-023-00812-5 (Source: J Appl Genet)
Source: J Appl Genet - December 22, 2023 Category: Genetics & Stem Cells Authors: Wei Wang Tao Xu Haibo Lu Guosi Li Leilei Gao Dong Liu Bangxing Han Shanyong Yi Source Type: research

Occurrence of mammary gland tumours in male dogs and its weak association with development of testicular tumours: a review
J Appl Genet. 2023 Dec 21. doi: 10.1007/s13353-023-00818-z. Online ahead of print.ABSTRACTMammary gland tumours (MGTs) are commonly occurring neoplasms in female dogs. However, rare cases of MGTs in male dogs have been reported for years. Due to the low incidence of MGTs in male dogs in comparison to female dogs, veterinary oncology is mainly focused on mammary neoplasms diagnosed in female dogs and extensive research is conducted in this scientific area. Therefore, there are no sufficient epidemiological data on male dogs and the aetiology of their tumour development is still poorly understood.The aim of this literature r...
Source: J Appl Genet - December 20, 2023 Category: Genetics & Stem Cells Authors: Angelika Tkaczyk-Wliz ło Krzysztof Kowal Anna Śmiech Brygida Ślaska Source Type: research

Occurrence of mammary gland tumours in male dogs and its weak association with development of testicular tumours: a review
J Appl Genet. 2023 Dec 21. doi: 10.1007/s13353-023-00818-z. Online ahead of print.ABSTRACTMammary gland tumours (MGTs) are commonly occurring neoplasms in female dogs. However, rare cases of MGTs in male dogs have been reported for years. Due to the low incidence of MGTs in male dogs in comparison to female dogs, veterinary oncology is mainly focused on mammary neoplasms diagnosed in female dogs and extensive research is conducted in this scientific area. Therefore, there are no sufficient epidemiological data on male dogs and the aetiology of their tumour development is still poorly understood.The aim of this literature r...
Source: J Appl Genet - December 20, 2023 Category: Genetics & Stem Cells Authors: Angelika Tkaczyk-Wliz ło Krzysztof Kowal Anna Śmiech Brygida Ślaska Source Type: research

Long-run real-time PCR analysis of repetitive nuclear elements as a novel tool for DNA damage quantification in single cells: an approach validated on mouse oocytes and fibroblasts
J Appl Genet. 2023 Dec 18. doi: 10.1007/s13353-023-00817-0. Online ahead of print.ABSTRACTSince DNA damage is of great importance in various biological processes, its rate is frequently assessed both in research studies and in medical diagnostics. The most precise methods of quantifying DNA damage are based on real-time PCR. However, in the conventional version, they require a large amount of genetic material and therefore their usefulness is limited to multicellular samples. Here, we present a novel approach to long-run real-time PCR-based DNA-damage quantification (L1-LORD-Q), which consists in amplification of long inte...
Source: J Appl Genet - December 19, 2023 Category: Genetics & Stem Cells Authors: Katarzyna Kotarska Łukasz Gąsior Joanna Rudnicka Zbigniew Pola ński Source Type: research

Characterization of runs of Homozygosity revealed genomic inbreeding and patterns of selection in indigenous sahiwal cattle
J Appl Genet. 2023 Dec 18. doi: 10.1007/s13353-023-00816-1. Online ahead of print.ABSTRACTRuns of homozygosity (ROH) are contiguous genomic regions, homozygous across all sites which arise in an individual due to the parents transmitting identical haplotypes to their offspring. The genetic improvement program of Sahiwal cattle after decades of selection needs re-assessment of breeding strategy and population phenomena. Hence, the present study was carried out to optimize input parameters in PLINK for ROH estimates, to explore ROH islands and assessment of pedigree and genome-based inbreeding in Sahiwal cattle. The sliding ...
Source: J Appl Genet - December 19, 2023 Category: Genetics & Stem Cells Authors: Satish Kumar Illa Shabahat Mumtaz Sapna Nath Sabyasachi Mukherjee Anupama Mukherjee Source Type: research

The effect of library preparation protocol on the efficiency of heteroplasmy detection in mitochondrial DNA using two massively parallel sequencing Illumina systems
J Appl Genet. 2023 Dec 19. doi: 10.1007/s13353-023-00821-4. Online ahead of print.ABSTRACTMassively parallel sequencing (MPS) technology has become the gold standard in mitochondrial DNA research due to its high sensitivity in detecting mtDNA heteroplasmy, a prognostic marker in various medical applications. Various MPS technologies and platforms used for mtDNA analysis exist. Obtaining reliable and sensitive results requires deep and uniform coverage of the entire mtDNA sequence, which is heavily influenced by the choice of library preparation method and sequencing platform. Here, we present a comparison of the sequencing...
Source: J Appl Genet - December 19, 2023 Category: Genetics & Stem Cells Authors: Daca-Roszak Patrycja Fiedorowicz Joanna Jankowski Maciej Ciesielka Marzanna Teresi ński Grzegorz Lipska-Zietkiewicz Beata Zietkiewicz Ewa Grzybowski Tomasz Skonieczna Katarzyna Source Type: research

Long-run real-time PCR analysis of repetitive nuclear elements as a novel tool for DNA damage quantification in single cells: an approach validated on mouse oocytes and fibroblasts
J Appl Genet. 2023 Dec 18. doi: 10.1007/s13353-023-00817-0. Online ahead of print.ABSTRACTSince DNA damage is of great importance in various biological processes, its rate is frequently assessed both in research studies and in medical diagnostics. The most precise methods of quantifying DNA damage are based on real-time PCR. However, in the conventional version, they require a large amount of genetic material and therefore their usefulness is limited to multicellular samples. Here, we present a novel approach to long-run real-time PCR-based DNA-damage quantification (L1-LORD-Q), which consists in amplification of long inte...
Source: J Appl Genet - December 19, 2023 Category: Genetics & Stem Cells Authors: Katarzyna Kotarska Łukasz Gąsior Joanna Rudnicka Zbigniew Pola ński Source Type: research

Characterization of runs of Homozygosity revealed genomic inbreeding and patterns of selection in indigenous sahiwal cattle
J Appl Genet. 2023 Dec 18. doi: 10.1007/s13353-023-00816-1. Online ahead of print.ABSTRACTRuns of homozygosity (ROH) are contiguous genomic regions, homozygous across all sites which arise in an individual due to the parents transmitting identical haplotypes to their offspring. The genetic improvement program of Sahiwal cattle after decades of selection needs re-assessment of breeding strategy and population phenomena. Hence, the present study was carried out to optimize input parameters in PLINK for ROH estimates, to explore ROH islands and assessment of pedigree and genome-based inbreeding in Sahiwal cattle. The sliding ...
Source: J Appl Genet - December 19, 2023 Category: Genetics & Stem Cells Authors: Satish Kumar Illa Shabahat Mumtaz Sapna Nath Sabyasachi Mukherjee Anupama Mukherjee Source Type: research