Autosomal recessive diseases among the Athabaskans of the southwestern United States: anthropological, medical, and scientific aspects
J Appl Genet. 2021 Apr 21. doi: 10.1007/s13353-021-00630-7. Online ahead of print.ABSTRACTThe peopling of the Americas by Native Americans occurred in 4 waves of which the last was Nadene language speakers of whom Athabaskans are the largest group. As the Europeans were entering the Southwestern states of the USA, Athabaskan hunting-gathering tribes were migrating South from Canada along the Rocky Mountains and undergoing potential bottlenecks reflected in autosomal recessive diseases shared by Apaches and Navajos. About 300 years ago, the Navajo developing a sedentary culture learned from Pueblo Indians while the Apache r...
Source: J Appl Genet - April 21, 2021 Category: Genetics & Stem Cells Authors: Robert P Erickson Source Type: research

Genetically related singers-acoustic feature analysis and impact on singer identification
In this study, we have attempted to answer the most curious question-how acoustically close are the genetically related singers? The present study has investigated this perception using two genetically different relations-three female sibling singers and father-son singer relation. These are famous Indian playback singers and the acoustic features are extracted using the songs of Bollywood films. Three different sets of self-developed cappella database are used for the experimentation. Positive correlations among the major musical aptitudes-pitch, vibrato, formant, and harmonic spectral envelope for both the singer relatio...
Source: J Appl Genet - April 15, 2021 Category: Genetics & Stem Cells Authors: Deepali Y Loni Shaila Subbaraman Source Type: research

Genetically related singers-acoustic feature analysis and impact on singer identification
In this study, we have attempted to answer the most curious question-how acoustically close are the genetically related singers? The present study has investigated this perception using two genetically different relations-three female sibling singers and father-son singer relation. These are famous Indian playback singers and the acoustic features are extracted using the songs of Bollywood films. Three different sets of self-developed cappella database are used for the experimentation. Positive correlations among the major musical aptitudes-pitch, vibrato, formant, and harmonic spectral envelope for both the singer relatio...
Source: J Appl Genet - April 15, 2021 Category: Genetics & Stem Cells Authors: Deepali Y Loni Shaila Subbaraman Source Type: research

Genetically related singers-acoustic feature analysis and impact on singer identification
In this study, we have attempted to answer the most curious question-how acoustically close are the genetically related singers? The present study has investigated this perception using two genetically different relations-three female sibling singers and father-son singer relation. These are famous Indian playback singers and the acoustic features are extracted using the songs of Bollywood films. Three different sets of self-developed cappella database are used for the experimentation. Positive correlations among the major musical aptitudes-pitch, vibrato, formant, and harmonic spectral envelope for both the singer relatio...
Source: J Appl Genet - April 15, 2021 Category: Genetics & Stem Cells Authors: Deepali Y Loni Shaila Subbaraman Source Type: research

Genetically related singers-acoustic feature analysis and impact on singer identification
In this study, we have attempted to answer the most curious question-how acoustically close are the genetically related singers? The present study has investigated this perception using two genetically different relations-three female sibling singers and father-son singer relation. These are famous Indian playback singers and the acoustic features are extracted using the songs of Bollywood films. Three different sets of self-developed cappella database are used for the experimentation. Positive correlations among the major musical aptitudes-pitch, vibrato, formant, and harmonic spectral envelope for both the singer relatio...
Source: J Appl Genet - April 15, 2021 Category: Genetics & Stem Cells Authors: Deepali Y Loni Shaila Subbaraman Source Type: research

Genetically related singers-acoustic feature analysis and impact on singer identification
In this study, we have attempted to answer the most curious question-how acoustically close are the genetically related singers? The present study has investigated this perception using two genetically different relations-three female sibling singers and father-son singer relation. These are famous Indian playback singers and the acoustic features are extracted using the songs of Bollywood films. Three different sets of self-developed cappella database are used for the experimentation. Positive correlations among the major musical aptitudes-pitch, vibrato, formant, and harmonic spectral envelope for both the singer relatio...
Source: J Appl Genet - April 15, 2021 Category: Genetics & Stem Cells Authors: Deepali Y Loni Shaila Subbaraman Source Type: research

Identification of major QTL for waterlogging tolerance in maize using genome-wide association study and bulked sample analysis
In this study, nine seedling traits, plant height (PH), root length (RL), shoot dry weight (SDW), root dry weight (RDW), adventitious root number (ARN), node number of brace root (BRNN), brace root number (BRN), brace root dry weigh (BRDW), survival rate (SR), and the secondary traits that were defined as relative phenotypic value of seedling traits under waterlogging and control treatments were used in a natural population that contain 365 inbred lines to evaluate the waterlogging tolerance of tropical maize. The result showed that maize waterlogging tolerance was genetically controlled and seedling traits were significan...
Source: J Appl Genet - March 31, 2021 Category: Genetics & Stem Cells Authors: Zifeng Guo Shuangzhen Zhou Shanhong Wang Wen-Xue Li Hewei Du Yunbi Xu Source Type: research

Identification of major QTL for waterlogging tolerance in maize using genome-wide association study and bulked sample analysis
In this study, nine seedling traits, plant height (PH), root length (RL), shoot dry weight (SDW), root dry weight (RDW), adventitious root number (ARN), node number of brace root (BRNN), brace root number (BRN), brace root dry weigh (BRDW), survival rate (SR), and the secondary traits that were defined as relative phenotypic value of seedling traits under waterlogging and control treatments were used in a natural population that contain 365 inbred lines to evaluate the waterlogging tolerance of tropical maize. The result showed that maize waterlogging tolerance was genetically controlled and seedling traits were significan...
Source: J Appl Genet - March 31, 2021 Category: Genetics & Stem Cells Authors: Zifeng Guo Shuangzhen Zhou Shanhong Wang Wen-Xue Li Hewei Du Yunbi Xu Source Type: research

Identification of major QTL for waterlogging tolerance in maize using genome-wide association study and bulked sample analysis
In this study, nine seedling traits, plant height (PH), root length (RL), shoot dry weight (SDW), root dry weight (RDW), adventitious root number (ARN), node number of brace root (BRNN), brace root number (BRN), brace root dry weigh (BRDW), survival rate (SR), and the secondary traits that were defined as relative phenotypic value of seedling traits under waterlogging and control treatments were used in a natural population that contain 365 inbred lines to evaluate the waterlogging tolerance of tropical maize. The result showed that maize waterlogging tolerance was genetically controlled and seedling traits were significan...
Source: J Appl Genet - March 31, 2021 Category: Genetics & Stem Cells Authors: Zifeng Guo Shuangzhen Zhou Shanhong Wang Wen-Xue Li Hewei Du Yunbi Xu Source Type: research

Identification of major QTL for waterlogging tolerance in maize using genome-wide association study and bulked sample analysis
In this study, nine seedling traits, plant height (PH), root length (RL), shoot dry weight (SDW), root dry weight (RDW), adventitious root number (ARN), node number of brace root (BRNN), brace root number (BRN), brace root dry weigh (BRDW), survival rate (SR), and the secondary traits that were defined as relative phenotypic value of seedling traits under waterlogging and control treatments were used in a natural population that contain 365 inbred lines to evaluate the waterlogging tolerance of tropical maize. The result showed that maize waterlogging tolerance was genetically controlled and seedling traits were significan...
Source: J Appl Genet - March 31, 2021 Category: Genetics & Stem Cells Authors: Zifeng Guo Shuangzhen Zhou Shanhong Wang Wen-Xue Li Hewei Du Yunbi Xu Source Type: research

Identification of major QTL for waterlogging tolerance in maize using genome-wide association study and bulked sample analysis
In this study, nine seedling traits, plant height (PH), root length (RL), shoot dry weight (SDW), root dry weight (RDW), adventitious root number (ARN), node number of brace root (BRNN), brace root number (BRN), brace root dry weigh (BRDW), survival rate (SR), and the secondary traits that were defined as relative phenotypic value of seedling traits under waterlogging and control treatments were used in a natural population that contain 365 inbred lines to evaluate the waterlogging tolerance of tropical maize. The result showed that maize waterlogging tolerance was genetically controlled and seedling traits were significan...
Source: J Appl Genet - March 31, 2021 Category: Genetics & Stem Cells Authors: Zifeng Guo Shuangzhen Zhou Shanhong Wang Wen-Xue Li Hewei Du Yunbi Xu Source Type: research

Identification of major QTL for waterlogging tolerance in maize using genome-wide association study and bulked sample analysis
In this study, nine seedling traits, plant height (PH), root length (RL), shoot dry weight (SDW), root dry weight (RDW), adventitious root number (ARN), node number of brace root (BRNN), brace root number (BRN), brace root dry weigh (BRDW), survival rate (SR), and the secondary traits that were defined as relative phenotypic value of seedling traits under waterlogging and control treatments were used in a natural population that contain 365 inbred lines to evaluate the waterlogging tolerance of tropical maize. The result showed that maize waterlogging tolerance was genetically controlled and seedling traits were significan...
Source: J Appl Genet - March 31, 2021 Category: Genetics & Stem Cells Authors: Zifeng Guo Shuangzhen Zhou Shanhong Wang Wen-Xue Li Hewei Du Yunbi Xu Source Type: research

Identification of major QTL for waterlogging tolerance in maize using genome-wide association study and bulked sample analysis
In this study, nine seedling traits, plant height (PH), root length (RL), shoot dry weight (SDW), root dry weight (RDW), adventitious root number (ARN), node number of brace root (BRNN), brace root number (BRN), brace root dry weigh (BRDW), survival rate (SR), and the secondary traits that were defined as relative phenotypic value of seedling traits under waterlogging and control treatments were used in a natural population that contain 365 inbred lines to evaluate the waterlogging tolerance of tropical maize. The result showed that maize waterlogging tolerance was genetically controlled and seedling traits were significan...
Source: J Appl Genet - March 31, 2021 Category: Genetics & Stem Cells Authors: Zifeng Guo Shuangzhen Zhou Shanhong Wang Wen-Xue Li Hewei Du Yunbi Xu Source Type: research

Identification of major QTL for waterlogging tolerance in maize using genome-wide association study and bulked sample analysis
In this study, nine seedling traits, plant height (PH), root length (RL), shoot dry weight (SDW), root dry weight (RDW), adventitious root number (ARN), node number of brace root (BRNN), brace root number (BRN), brace root dry weigh (BRDW), survival rate (SR), and the secondary traits that were defined as relative phenotypic value of seedling traits under waterlogging and control treatments were used in a natural population that contain 365 inbred lines to evaluate the waterlogging tolerance of tropical maize. The result showed that maize waterlogging tolerance was genetically controlled and seedling traits were significan...
Source: J Appl Genet - March 31, 2021 Category: Genetics & Stem Cells Authors: Zifeng Guo Shuangzhen Zhou Shanhong Wang Wen-Xue Li Hewei Du Yunbi Xu Source Type: research

Identification of major QTL for waterlogging tolerance in maize using genome-wide association study and bulked sample analysis
In this study, nine seedling traits, plant height (PH), root length (RL), shoot dry weight (SDW), root dry weight (RDW), adventitious root number (ARN), node number of brace root (BRNN), brace root number (BRN), brace root dry weigh (BRDW), survival rate (SR), and the secondary traits that were defined as relative phenotypic value of seedling traits under waterlogging and control treatments were used in a natural population that contain 365 inbred lines to evaluate the waterlogging tolerance of tropical maize. The result showed that maize waterlogging tolerance was genetically controlled and seedling traits were significan...
Source: J Appl Genet - March 31, 2021 Category: Genetics & Stem Cells Authors: Zifeng Guo Shuangzhen Zhou Shanhong Wang Wen-Xue Li Hewei Du Yunbi Xu Source Type: research

Identification of major QTL for waterlogging tolerance in maize using genome-wide association study and bulked sample analysis
In this study, nine seedling traits, plant height (PH), root length (RL), shoot dry weight (SDW), root dry weight (RDW), adventitious root number (ARN), node number of brace root (BRNN), brace root number (BRN), brace root dry weigh (BRDW), survival rate (SR), and the secondary traits that were defined as relative phenotypic value of seedling traits under waterlogging and control treatments were used in a natural population that contain 365 inbred lines to evaluate the waterlogging tolerance of tropical maize. The result showed that maize waterlogging tolerance was genetically controlled and seedling traits were significan...
Source: J Appl Genet - March 31, 2021 Category: Genetics & Stem Cells Authors: Zifeng Guo Shuangzhen Zhou Shanhong Wang Wen-Xue Li Hewei Du Yunbi Xu Source Type: research

Identification of major QTL for waterlogging tolerance in maize using genome-wide association study and bulked sample analysis
In this study, nine seedling traits, plant height (PH), root length (RL), shoot dry weight (SDW), root dry weight (RDW), adventitious root number (ARN), node number of brace root (BRNN), brace root number (BRN), brace root dry weigh (BRDW), survival rate (SR), and the secondary traits that were defined as relative phenotypic value of seedling traits under waterlogging and control treatments were used in a natural population that contain 365 inbred lines to evaluate the waterlogging tolerance of tropical maize. The result showed that maize waterlogging tolerance was genetically controlled and seedling traits were significan...
Source: J Appl Genet - March 31, 2021 Category: Genetics & Stem Cells Authors: Zifeng Guo Shuangzhen Zhou Shanhong Wang Wen-Xue Li Hewei Du Yunbi Xu Source Type: research

Identification of major QTL for waterlogging tolerance in maize using genome-wide association study and bulked sample analysis
In this study, nine seedling traits, plant height (PH), root length (RL), shoot dry weight (SDW), root dry weight (RDW), adventitious root number (ARN), node number of brace root (BRNN), brace root number (BRN), brace root dry weigh (BRDW), survival rate (SR), and the secondary traits that were defined as relative phenotypic value of seedling traits under waterlogging and control treatments were used in a natural population that contain 365 inbred lines to evaluate the waterlogging tolerance of tropical maize. The result showed that maize waterlogging tolerance was genetically controlled and seedling traits were significan...
Source: J Appl Genet - March 31, 2021 Category: Genetics & Stem Cells Authors: Zifeng Guo Shuangzhen Zhou Shanhong Wang Wen-Xue Li Hewei Du Yunbi Xu Source Type: research

Transcriptome sequencing of wild soybean revealed gene expression dynamics under low nitrogen stress
In this study, we analyzed and compared the transcriptomes of wild soybean subjected to LN treatments. We totally identified 1095 (681 up and 414 down) and 5490 (2998 up and 2492 down) differentially expressed genes (DEGs) in the aerial parts (leaf and stem, LS) and roots, respectively. Gene ontology classification analysis revealed that the categories related to LN stress (including oxidation reduction, transcriptional regulation, membrane, and protein phosphorylation) were highly enriched among DEGs. In addition, a total of 784 transcription factor (TF) and 84 transporter protein (TP) genes were determined in LS DEGs, of...
Source: J Appl Genet - March 26, 2021 Category: Genetics & Stem Cells Authors: Qi Sun Haoran Lu Qing Zhang Di Wang Jun Chen Jialei Xiao Xiaodong Ding Qiang Li Source Type: research

Transcriptome sequencing of wild soybean revealed gene expression dynamics under low nitrogen stress
In this study, we analyzed and compared the transcriptomes of wild soybean subjected to LN treatments. We totally identified 1095 (681 up and 414 down) and 5490 (2998 up and 2492 down) differentially expressed genes (DEGs) in the aerial parts (leaf and stem, LS) and roots, respectively. Gene ontology classification analysis revealed that the categories related to LN stress (including oxidation reduction, transcriptional regulation, membrane, and protein phosphorylation) were highly enriched among DEGs. In addition, a total of 784 transcription factor (TF) and 84 transporter protein (TP) genes were determined in LS DEGs, of...
Source: J Appl Genet - March 26, 2021 Category: Genetics & Stem Cells Authors: Qi Sun Haoran Lu Qing Zhang Di Wang Jun Chen Jialei Xiao Xiaodong Ding Qiang Li Source Type: research

Transcriptome sequencing of wild soybean revealed gene expression dynamics under low nitrogen stress
In this study, we analyzed and compared the transcriptomes of wild soybean subjected to LN treatments. We totally identified 1095 (681 up and 414 down) and 5490 (2998 up and 2492 down) differentially expressed genes (DEGs) in the aerial parts (leaf and stem, LS) and roots, respectively. Gene ontology classification analysis revealed that the categories related to LN stress (including oxidation reduction, transcriptional regulation, membrane, and protein phosphorylation) were highly enriched among DEGs. In addition, a total of 784 transcription factor (TF) and 84 transporter protein (TP) genes were determined in LS DEGs, of...
Source: J Appl Genet - March 26, 2021 Category: Genetics & Stem Cells Authors: Qi Sun Haoran Lu Qing Zhang Di Wang Jun Chen Jialei Xiao Xiaodong Ding Qiang Li Source Type: research

Transcriptome sequencing of wild soybean revealed gene expression dynamics under low nitrogen stress
In this study, we analyzed and compared the transcriptomes of wild soybean subjected to LN treatments. We totally identified 1095 (681 up and 414 down) and 5490 (2998 up and 2492 down) differentially expressed genes (DEGs) in the aerial parts (leaf and stem, LS) and roots, respectively. Gene ontology classification analysis revealed that the categories related to LN stress (including oxidation reduction, transcriptional regulation, membrane, and protein phosphorylation) were highly enriched among DEGs. In addition, a total of 784 transcription factor (TF) and 84 transporter protein (TP) genes were determined in LS DEGs, of...
Source: J Appl Genet - March 26, 2021 Category: Genetics & Stem Cells Authors: Qi Sun Haoran Lu Qing Zhang Di Wang Jun Chen Jialei Xiao Xiaodong Ding Qiang Li Source Type: research

A simple sexing test for elephant species and its application to faecal DNA
J Appl Genet. 2021 Mar 23. doi: 10.1007/s13353-021-00627-2. Online ahead of print.ABSTRACTWe developed a novel real-time PCR assay for rapid sexing in all three elephant species, which amplifies small fragments of the orthologous sexual chromosome zinc finger protein genes ZFX/ZFY (65 bp). This assay is a simple, inexpensive and reliable tool that is suitable for non-invasive DNA samples and can be incorporated into larger SNP panels for individual identification and population genetic studies.PMID:33759056 | DOI:10.1007/s13353-021-00627-2 (Source: J Appl Genet)
Source: J Appl Genet - March 24, 2021 Category: Genetics & Stem Cells Authors: St éphanie Bourgeois K Ouitavon P Kongmee T Veeramaethaphan J Kaden R McEwing Source Type: research

A simple sexing test for elephant species and its application to faecal DNA
J Appl Genet. 2021 Mar 23. doi: 10.1007/s13353-021-00627-2. Online ahead of print.ABSTRACTWe developed a novel real-time PCR assay for rapid sexing in all three elephant species, which amplifies small fragments of the orthologous sexual chromosome zinc finger protein genes ZFX/ZFY (65 bp). This assay is a simple, inexpensive and reliable tool that is suitable for non-invasive DNA samples and can be incorporated into larger SNP panels for individual identification and population genetic studies.PMID:33759056 | DOI:10.1007/s13353-021-00627-2 (Source: J Appl Genet)
Source: J Appl Genet - March 24, 2021 Category: Genetics & Stem Cells Authors: St éphanie Bourgeois K Ouitavon P Kongmee T Veeramaethaphan J Kaden R McEwing Source Type: research

A simple sexing test for elephant species and its application to faecal DNA
J Appl Genet. 2021 Mar 23. doi: 10.1007/s13353-021-00627-2. Online ahead of print.ABSTRACTWe developed a novel real-time PCR assay for rapid sexing in all three elephant species, which amplifies small fragments of the orthologous sexual chromosome zinc finger protein genes ZFX/ZFY (65 bp). This assay is a simple, inexpensive and reliable tool that is suitable for non-invasive DNA samples and can be incorporated into larger SNP panels for individual identification and population genetic studies.PMID:33759056 | DOI:10.1007/s13353-021-00627-2 (Source: J Appl Genet)
Source: J Appl Genet - March 24, 2021 Category: Genetics & Stem Cells Authors: St éphanie Bourgeois K Ouitavon P Kongmee T Veeramaethaphan J Kaden R McEwing Source Type: research

Developing a new genic SSR primer database in faba bean (Vicia faba L.)
J Appl Genet. 2021 Mar 23. doi: 10.1007/s13353-021-00626-3. Online ahead of print.ABSTRACTThe goal of this research was to develop a new genetic database of simple sequence repetition (SSR) primers for faba and classify them according to their target genes and respective biological processes. Approximately 75,605 and 148,196 previously published genomic and transcriptomic faba sequences, respectively, have been used to detect possible SSRs. The numbers of identified SSRs from each dataset were 25,502 and 12,319, respectively. The distribution of different repeat classes indicated that trinucleotides represent the largest n...
Source: J Appl Genet - March 23, 2021 Category: Genetics & Stem Cells Authors: Kareem A Khalifa Shafik D Ibrahim Hoda A S El-Garhy Mahmoud M M Moustafa Fouad Maalouf Alsamman M Alsamman Aladdin Hamwieh Achraf El Allali Source Type: research

Albert de la Chapelle-pro memoriam
J Appl Genet. 2021 Mar 15. doi: 10.1007/s13353-021-00625-4. Online ahead of print.ABSTRACTIn this brief article, we celebrate the life and numerous scientific achievements of Dr. Albert de la Chapelle, a pioneer in the fields of human genetics and cytogenetics.PMID:33721188 | DOI:10.1007/s13353-021-00625-4 (Source: J Appl Genet)
Source: J Appl Genet - March 15, 2021 Category: Genetics & Stem Cells Authors: Janusz Limon Krzysztof Mr ózek Source Type: research

Albert de la Chapelle-pro memoriam
J Appl Genet. 2021 Mar 15. doi: 10.1007/s13353-021-00625-4. Online ahead of print.ABSTRACTIn this brief article, we celebrate the life and numerous scientific achievements of Dr. Albert de la Chapelle, a pioneer in the fields of human genetics and cytogenetics.PMID:33721188 | DOI:10.1007/s13353-021-00625-4 (Source: J Appl Genet)
Source: J Appl Genet - March 15, 2021 Category: Genetics & Stem Cells Authors: Janusz Limon Krzysztof Mr ózek Source Type: research

Albert de la Chapelle-pro memoriam
J Appl Genet. 2021 Mar 15. doi: 10.1007/s13353-021-00625-4. Online ahead of print.ABSTRACTIn this brief article, we celebrate the life and numerous scientific achievements of Dr. Albert de la Chapelle, a pioneer in the fields of human genetics and cytogenetics.PMID:33721188 | DOI:10.1007/s13353-021-00625-4 (Source: J Appl Genet)
Source: J Appl Genet - March 15, 2021 Category: Genetics & Stem Cells Authors: Janusz Limon Krzysztof Mr ózek Source Type: research

Albert de la Chapelle-pro memoriam
J Appl Genet. 2021 Mar 15. doi: 10.1007/s13353-021-00625-4. Online ahead of print.ABSTRACTIn this brief article, we celebrate the life and numerous scientific achievements of Dr. Albert de la Chapelle, a pioneer in the fields of human genetics and cytogenetics.PMID:33721188 | DOI:10.1007/s13353-021-00625-4 (Source: J Appl Genet)
Source: J Appl Genet - March 15, 2021 Category: Genetics & Stem Cells Authors: Janusz Limon Krzysztof Mr ózek Source Type: research

Albert de la Chapelle-pro memoriam
J Appl Genet. 2021 Mar 15. doi: 10.1007/s13353-021-00625-4. Online ahead of print.ABSTRACTIn this brief article, we celebrate the life and numerous scientific achievements of Dr. Albert de la Chapelle, a pioneer in the fields of human genetics and cytogenetics.PMID:33721188 | DOI:10.1007/s13353-021-00625-4 (Source: J Appl Genet)
Source: J Appl Genet - March 15, 2021 Category: Genetics & Stem Cells Authors: Janusz Limon Krzysztof Mr ózek Source Type: research

Albert de la Chapelle-pro memoriam
J Appl Genet. 2021 Mar 15. doi: 10.1007/s13353-021-00625-4. Online ahead of print.ABSTRACTIn this brief article, we celebrate the life and numerous scientific achievements of Dr. Albert de la Chapelle, a pioneer in the fields of human genetics and cytogenetics.PMID:33721188 | DOI:10.1007/s13353-021-00625-4 (Source: J Appl Genet)
Source: J Appl Genet - March 15, 2021 Category: Genetics & Stem Cells Authors: Janusz Limon Krzysztof Mr ózek Source Type: research

Albert de la Chapelle-pro memoriam
J Appl Genet. 2021 Mar 15. doi: 10.1007/s13353-021-00625-4. Online ahead of print.ABSTRACTIn this brief article, we celebrate the life and numerous scientific achievements of Dr. Albert de la Chapelle, a pioneer in the fields of human genetics and cytogenetics.PMID:33721188 | DOI:10.1007/s13353-021-00625-4 (Source: J Appl Genet)
Source: J Appl Genet - March 15, 2021 Category: Genetics & Stem Cells Authors: Janusz Limon Krzysztof Mr ózek Source Type: research

Clustered and dispersed chromosomal distribution of the two classes of Revolver transposon family in rye (Secale cereale)
J Appl Genet. 2021 Mar 10. doi: 10.1007/s13353-021-00617-4. Online ahead of print.ABSTRACTThe chromosomal locations of a new class of Revolver transposon-like elements were analyzed by using FISH method on the metaphase chromosome in somatic cell division of the rye cultivar Petkus. First, the Revolver standard element probe λ2 was weakly hybridized throughout the rye chromosome, and comparatively large interstitial signals spotted with a dot shape were detected together with several telomeric regions. The dot shape interstitial signal was stably detected at one site on Chromosome (Chr) 1R (middle part of the inters...
Source: J Appl Genet - March 11, 2021 Category: Genetics & Stem Cells Authors: Motonori Tomita Takaaki Kanzaki Eri Tanaka Source Type: research

Clustered and dispersed chromosomal distribution of the two classes of Revolver transposon family in rye (Secale cereale)
J Appl Genet. 2021 Mar 10. doi: 10.1007/s13353-021-00617-4. Online ahead of print.ABSTRACTThe chromosomal locations of a new class of Revolver transposon-like elements were analyzed by using FISH method on the metaphase chromosome in somatic cell division of the rye cultivar Petkus. First, the Revolver standard element probe λ2 was weakly hybridized throughout the rye chromosome, and comparatively large interstitial signals spotted with a dot shape were detected together with several telomeric regions. The dot shape interstitial signal was stably detected at one site on Chromosome (Chr) 1R (middle part of the inters...
Source: J Appl Genet - March 11, 2021 Category: Genetics & Stem Cells Authors: Motonori Tomita Takaaki Kanzaki Eri Tanaka Source Type: research

Clustered and dispersed chromosomal distribution of the two classes of Revolver transposon family in rye (Secale cereale)
J Appl Genet. 2021 Mar 10. doi: 10.1007/s13353-021-00617-4. Online ahead of print.ABSTRACTThe chromosomal locations of a new class of Revolver transposon-like elements were analyzed by using FISH method on the metaphase chromosome in somatic cell division of the rye cultivar Petkus. First, the Revolver standard element probe λ2 was weakly hybridized throughout the rye chromosome, and comparatively large interstitial signals spotted with a dot shape were detected together with several telomeric regions. The dot shape interstitial signal was stably detected at one site on Chromosome (Chr) 1R (middle part of the inters...
Source: J Appl Genet - March 11, 2021 Category: Genetics & Stem Cells Authors: Motonori Tomita Takaaki Kanzaki Eri Tanaka Source Type: research

Clustered and dispersed chromosomal distribution of the two classes of Revolver transposon family in rye (Secale cereale)
J Appl Genet. 2021 Mar 10. doi: 10.1007/s13353-021-00617-4. Online ahead of print.ABSTRACTThe chromosomal locations of a new class of Revolver transposon-like elements were analyzed by using FISH method on the metaphase chromosome in somatic cell division of the rye cultivar Petkus. First, the Revolver standard element probe λ2 was weakly hybridized throughout the rye chromosome, and comparatively large interstitial signals spotted with a dot shape were detected together with several telomeric regions. The dot shape interstitial signal was stably detected at one site on Chromosome (Chr) 1R (middle part of the inters...
Source: J Appl Genet - March 11, 2021 Category: Genetics & Stem Cells Authors: Motonori Tomita Takaaki Kanzaki Eri Tanaka Source Type: research

QTL analysis of seed germination traits in tobacco (Nicotiana tabacum L.)
J Appl Genet. 2021 Mar 5. doi: 10.1007/s13353-021-00623-6. Online ahead of print.ABSTRACTGenetic mapping of seed germination traits has been performed with many plant species. In tobacco, however, investigations are rare. In the present study, a bi-parental mapping population consisting of 118 doubled haploid lines and derived from a cross between 'Beinhart-1000' and 'Hicks' was investigated. Four germination-related traits, total germination (TG), normal germination (NG), time to reach 50% of total germination (T50), and the area under the curve after 200 h of germination (AUC) were considered by examining seeds either un...
Source: J Appl Genet - March 6, 2021 Category: Genetics & Stem Cells Authors: Monika Agacka-Mo łdoch Mian Abdur Rehman Arif Ulrike Lohwasser Teresa Doroszewska Ramsey S Lewis Andreas B örner Source Type: research

QTL analysis of seed germination traits in tobacco (Nicotiana tabacum L.)
J Appl Genet. 2021 Mar 5. doi: 10.1007/s13353-021-00623-6. Online ahead of print.ABSTRACTGenetic mapping of seed germination traits has been performed with many plant species. In tobacco, however, investigations are rare. In the present study, a bi-parental mapping population consisting of 118 doubled haploid lines and derived from a cross between 'Beinhart-1000' and 'Hicks' was investigated. Four germination-related traits, total germination (TG), normal germination (NG), time to reach 50% of total germination (T50), and the area under the curve after 200 h of germination (AUC) were considered by examining seeds either un...
Source: J Appl Genet - March 6, 2021 Category: Genetics & Stem Cells Authors: Monika Agacka-Mo łdoch Mian Abdur Rehman Arif Ulrike Lohwasser Teresa Doroszewska Ramsey S Lewis Andreas B örner Source Type: research

QTL analysis of seed germination traits in tobacco (Nicotiana tabacum L.)
J Appl Genet. 2021 Mar 5. doi: 10.1007/s13353-021-00623-6. Online ahead of print.ABSTRACTGenetic mapping of seed germination traits has been performed with many plant species. In tobacco, however, investigations are rare. In the present study, a bi-parental mapping population consisting of 118 doubled haploid lines and derived from a cross between 'Beinhart-1000' and 'Hicks' was investigated. Four germination-related traits, total germination (TG), normal germination (NG), time to reach 50% of total germination (T50), and the area under the curve after 200 h of germination (AUC) were considered by examining seeds either un...
Source: J Appl Genet - March 6, 2021 Category: Genetics & Stem Cells Authors: Monika Agacka-Mo łdoch Mian Abdur Rehman Arif Ulrike Lohwasser Teresa Doroszewska Ramsey S Lewis Andreas B örner Source Type: research

QTL analysis of seed germination traits in tobacco (Nicotiana tabacum L.)
J Appl Genet. 2021 Mar 5. doi: 10.1007/s13353-021-00623-6. Online ahead of print.ABSTRACTGenetic mapping of seed germination traits has been performed with many plant species. In tobacco, however, investigations are rare. In the present study, a bi-parental mapping population consisting of 118 doubled haploid lines and derived from a cross between 'Beinhart-1000' and 'Hicks' was investigated. Four germination-related traits, total germination (TG), normal germination (NG), time to reach 50% of total germination (T50), and the area under the curve after 200 h of germination (AUC) were considered by examining seeds either un...
Source: J Appl Genet - March 6, 2021 Category: Genetics & Stem Cells Authors: Monika Agacka-Mo łdoch Mian Abdur Rehman Arif Ulrike Lohwasser Teresa Doroszewska Ramsey S Lewis Andreas B örner Source Type: research

QTL analysis of seed germination traits in tobacco (Nicotiana tabacum L.)
J Appl Genet. 2021 Mar 5. doi: 10.1007/s13353-021-00623-6. Online ahead of print.ABSTRACTGenetic mapping of seed germination traits has been performed with many plant species. In tobacco, however, investigations are rare. In the present study, a bi-parental mapping population consisting of 118 doubled haploid lines and derived from a cross between 'Beinhart-1000' and 'Hicks' was investigated. Four germination-related traits, total germination (TG), normal germination (NG), time to reach 50% of total germination (T50), and the area under the curve after 200 h of germination (AUC) were considered by examining seeds either un...
Source: J Appl Genet - March 6, 2021 Category: Genetics & Stem Cells Authors: Monika Agacka-Mo łdoch Mian Abdur Rehman Arif Ulrike Lohwasser Teresa Doroszewska Ramsey S Lewis Andreas B örner Source Type: research

Correction to: DNA methylation studies in cattle
J Appl Genet. 2021 Mar 2. doi: 10.1007/s13353-021-00622-7. Online ahead of print.NO ABSTRACTPMID:33651284 | DOI:10.1007/s13353-021-00622-7 (Source: J Appl Genet)
Source: J Appl Genet - March 2, 2021 Category: Genetics & Stem Cells Authors: Jana Halu šková Be áta Holečková Jana Stani čová Source Type: research

Correction to: DNA methylation studies in cattle
J Appl Genet. 2021 Mar 2. doi: 10.1007/s13353-021-00622-7. Online ahead of print.NO ABSTRACTPMID:33651284 | DOI:10.1007/s13353-021-00622-7 (Source: J Appl Genet)
Source: J Appl Genet - March 2, 2021 Category: Genetics & Stem Cells Authors: Jana Halu šková Be áta Holečková Jana Stani čová Source Type: research

Correction to: DNA methylation studies in cattle
J Appl Genet. 2021 Mar 2. doi: 10.1007/s13353-021-00622-7. Online ahead of print.NO ABSTRACTPMID:33651284 | DOI:10.1007/s13353-021-00622-7 (Source: J Appl Genet)
Source: J Appl Genet - March 2, 2021 Category: Genetics & Stem Cells Authors: Jana Halu šková Be áta Holečková Jana Stani čová Source Type: research

Response of the ileum transcriptome to probiotic and fructo-oligosaccharides in Taiping chicken
In this study, we used RNA-Seq analysis to study the gene expression in ileum tissue after Taiping chicken was given probiotics and fructo-oligosaccharides. In total, 67 genes were differentially expressed in the ileum. Ten of the differently expressed genes were further validated by RT-qPCR. In addition, these differentially expressed genes were mainly enriched to tyrosine metabolism, AGE-RAGE signaling pathway in diabetic complications, phenylalanine metabolism, and pyrimidine metabolism. The results which this study provides contribute to our understanding application of probiotics and fructo-oligosaccharides in indigen...
Source: J Appl Genet - February 27, 2021 Category: Genetics & Stem Cells Authors: Lintong Luo Fang Ma Qianning Wang Source Type: research

Response of the ileum transcriptome to probiotic and fructo-oligosaccharides in Taiping chicken
In this study, we used RNA-Seq analysis to study the gene expression in ileum tissue after Taiping chicken was given probiotics and fructo-oligosaccharides. In total, 67 genes were differentially expressed in the ileum. Ten of the differently expressed genes were further validated by RT-qPCR. In addition, these differentially expressed genes were mainly enriched to tyrosine metabolism, AGE-RAGE signaling pathway in diabetic complications, phenylalanine metabolism, and pyrimidine metabolism. The results which this study provides contribute to our understanding application of probiotics and fructo-oligosaccharides in indigen...
Source: J Appl Genet - February 27, 2021 Category: Genetics & Stem Cells Authors: Lintong Luo Fang Ma Qianning Wang Source Type: research

Response of the ileum transcriptome to probiotic and fructo-oligosaccharides in Taiping chicken
In this study, we used RNA-Seq analysis to study the gene expression in ileum tissue after Taiping chicken was given probiotics and fructo-oligosaccharides. In total, 67 genes were differentially expressed in the ileum. Ten of the differently expressed genes were further validated by RT-qPCR. In addition, these differentially expressed genes were mainly enriched to tyrosine metabolism, AGE-RAGE signaling pathway in diabetic complications, phenylalanine metabolism, and pyrimidine metabolism. The results which this study provides contribute to our understanding application of probiotics and fructo-oligosaccharides in indigen...
Source: J Appl Genet - February 27, 2021 Category: Genetics & Stem Cells Authors: Lintong Luo Fang Ma Qianning Wang Source Type: research

Genome-wide identification and function characterization of GATA transcription factors during development and in response to abiotic stresses and hormone treatments in pepper
In this study, a total of 28 pepper GATA (CaGATA) genes were identified. To gain an overview of the CaGATAs, we analyzed their chromosomal distribution, gene structure, conservative domains, cis-elements, phylogeny, and evolutionary relationship. We divided 28 CaGATAs into four groups distributed on 10 chromosomes, and identified 7 paralogs in CaGATA family of pepper and 35 orthologous gene pairs between CaGATAs and Arabidopsis GATAs (AtGATAs). The results of promoter cis-element analysis and the quantitative real-time PCR (qRT-PCR) analysis revealed that CaGATA genes were involved in regulating the plant growth and develo...
Source: J Appl Genet - February 24, 2021 Category: Genetics & Stem Cells Authors: Chuying Yu Ning Li Yanxu Yin Fei Wang Shenghua Gao Chunhai Jiao Minghua Yao Source Type: research

Genome-wide identification and function characterization of GATA transcription factors during development and in response to abiotic stresses and hormone treatments in pepper
In this study, a total of 28 pepper GATA (CaGATA) genes were identified. To gain an overview of the CaGATAs, we analyzed their chromosomal distribution, gene structure, conservative domains, cis-elements, phylogeny, and evolutionary relationship. We divided 28 CaGATAs into four groups distributed on 10 chromosomes, and identified 7 paralogs in CaGATA family of pepper and 35 orthologous gene pairs between CaGATAs and Arabidopsis GATAs (AtGATAs). The results of promoter cis-element analysis and the quantitative real-time PCR (qRT-PCR) analysis revealed that CaGATA genes were involved in regulating the plant growth and develo...
Source: J Appl Genet - February 24, 2021 Category: Genetics & Stem Cells Authors: Chuying Yu Ning Li Yanxu Yin Fei Wang Shenghua Gao Chunhai Jiao Minghua Yao Source Type: research