Constructing Integrative ceRNA Networks and Finding Prognostic Biomarkers in Renal Cell Carcinoma
(Source: IEEE/ACM Transactions on Computational Biology and Bioinformatics)
Source: IEEE/ACM Transactions on Computational Biology and Bioinformatics - October 10, 2023 Category: Bioinformatics Source Type: research

Predicting MiRNA-Disease Associations by Graph Representation Learning Based on Jumping Knowledge Networks
(Source: IEEE/ACM Transactions on Computational Biology and Bioinformatics)
Source: IEEE/ACM Transactions on Computational Biology and Bioinformatics - October 10, 2023 Category: Bioinformatics Source Type: research

Protein-DNA Binding Residues Prediction Using a Deep Learning Model With Hierarchical Feature Extraction
(Source: IEEE/ACM Transactions on Computational Biology and Bioinformatics)
Source: IEEE/ACM Transactions on Computational Biology and Bioinformatics - October 10, 2023 Category: Bioinformatics Source Type: research

RNPredATC: A Deep Residual Learning-Based Model With Applications to the Prediction of Drug-ATC Code Association
(Source: IEEE/ACM Transactions on Computational Biology and Bioinformatics)
Source: IEEE/ACM Transactions on Computational Biology and Bioinformatics - October 10, 2023 Category: Bioinformatics Source Type: research

MTGDC: A Multi-Scale Tensor Graph Diffusion Clustering for Single-Cell RNA Sequencing Data
(Source: IEEE/ACM Transactions on Computational Biology and Bioinformatics)
Source: IEEE/ACM Transactions on Computational Biology and Bioinformatics - October 10, 2023 Category: Bioinformatics Source Type: research

CNNGRN: A Convolutional Neural Network-Based Method for Gene Regulatory Network Inference From Bulk Time-Series Expression Data
(Source: IEEE/ACM Transactions on Computational Biology and Bioinformatics)
Source: IEEE/ACM Transactions on Computational Biology and Bioinformatics - October 10, 2023 Category: Bioinformatics Source Type: research

PointDE: Protein Docking Evaluation Using 3D Point Cloud Neural Network
(Source: IEEE/ACM Transactions on Computational Biology and Bioinformatics)
Source: IEEE/ACM Transactions on Computational Biology and Bioinformatics - October 10, 2023 Category: Bioinformatics Source Type: research

Improving Inter-Helix Contact Prediction With Local 2D Topological Information
(Source: IEEE/ACM Transactions on Computational Biology and Bioinformatics)
Source: IEEE/ACM Transactions on Computational Biology and Bioinformatics - October 10, 2023 Category: Bioinformatics Source Type: research

GCSTI: A Single-Cell Pseudotemporal Trajectory Inference Method Based on Graph Compression
(Source: IEEE/ACM Transactions on Computational Biology and Bioinformatics)
Source: IEEE/ACM Transactions on Computational Biology and Bioinformatics - October 10, 2023 Category: Bioinformatics Source Type: research

Hierarchical Vaccine Allocation Based on Epidemiological and Behavioral Considerations
(Source: IEEE/ACM Transactions on Computational Biology and Bioinformatics)
Source: IEEE/ACM Transactions on Computational Biology and Bioinformatics - October 10, 2023 Category: Bioinformatics Source Type: research

Potential circRNA-Disease Association Prediction Using DeepWalk and Nonnegative Matrix Factorization
(Source: IEEE/ACM Transactions on Computational Biology and Bioinformatics)
Source: IEEE/ACM Transactions on Computational Biology and Bioinformatics - October 10, 2023 Category: Bioinformatics Source Type: research

Enhancing Biomedical ReQA With Adversarial Hard In-Batch Negative Samples
(Source: IEEE/ACM Transactions on Computational Biology and Bioinformatics)
Source: IEEE/ACM Transactions on Computational Biology and Bioinformatics - October 10, 2023 Category: Bioinformatics Source Type: research

Predator: Predicting the Impact of Cancer Somatic Mutations on Protein-Protein Interactions
(Source: IEEE/ACM Transactions on Computational Biology and Bioinformatics)
Source: IEEE/ACM Transactions on Computational Biology and Bioinformatics - October 10, 2023 Category: Bioinformatics Source Type: research

Molecular Joint Representation Learning via Multi-Modal Information of SMILES and Graphs
(Source: IEEE/ACM Transactions on Computational Biology and Bioinformatics)
Source: IEEE/ACM Transactions on Computational Biology and Bioinformatics - October 10, 2023 Category: Bioinformatics Source Type: research

StemP: A Fast and Deterministic Stem-Graph Approach for RNA Secondary Structure Prediction
(Source: IEEE/ACM Transactions on Computational Biology and Bioinformatics)
Source: IEEE/ACM Transactions on Computational Biology and Bioinformatics - October 10, 2023 Category: Bioinformatics Source Type: research