An Integrated Systems Biology Approach Identifies the Proteasome as A Critical Host Machinery for ZIKV and DENV Replication
Publication date: Available online 19 February 2021Source: Genomics, Proteomics & BioinformaticsAuthor(s): Guang Song, Emily M. Lee, Jianbo Pan, Miao Xu, Hee-Sool Rho, Yichen Cheng, Nadia Whitt, Shu Yang, Jennifer Kouznetsova, Carleen Klumpp-Thomas, Samuel G. Michael, Cedric Moore, Ki-Jun Yoon, Kimberly M. Christian, Anton Simeonov, Wenwei Huang, Menghang Xia, Ruili Huang, Madhu Lal-Nag, Hengli Tang (Source: Genomics, Proteomics and Bioinformatics)
Source: Genomics, Proteomics and Bioinformatics - February 19, 2021 Category: Bioinformatics Source Type: research

Phosphoproteomics Reveals AMPK Substrate Network in Response to DNA Damage and Histone Acetylation
Publication date: Available online 17 February 2021Source: Genomics, Proteomics & BioinformaticsAuthor(s): Yuejing Jiang, Xiaoji Cong, Shangwen Jiang, Ying Dong, Lei Zhao, Yi Zang, Minjia Tan, Jia Li (Source: Genomics, Proteomics and Bioinformatics)
Source: Genomics, Proteomics and Bioinformatics - February 18, 2021 Category: Bioinformatics Source Type: research

redPATH: Reconstructing the Pseudo Development Time of Cell Lineages in Single-cell RNA-seq Data and Applications in Cancer
Publication date: Available online 17 February 2021Source: Genomics, Proteomics & BioinformaticsAuthor(s): Kaikun Xie, Zehua Liu, Ning Chen, Ting Chen (Source: Genomics, Proteomics and Bioinformatics)
Source: Genomics, Proteomics and Bioinformatics - February 18, 2021 Category: Bioinformatics Source Type: research

Specificity of RNA Folding and Its Association with Evolutionarily Adaptive mRNA Secondary Structures
Publication date: Available online 17 February 2021Source: Genomics, Proteomics & BioinformaticsAuthor(s): Gongwang Yu, Hanbing Zhu, Xiaoshu Chen, Jian-Rong Yang (Source: Genomics, Proteomics and Bioinformatics)
Source: Genomics, Proteomics and Bioinformatics - February 18, 2021 Category: Bioinformatics Source Type: research

Screening of Potential Biomarkers for Gastric Cancer with Diagnostic Value Using Label-free Global Proteome Analysis
Publication date: Available online 17 February 2021Source: Genomics, Proteomics & BioinformaticsAuthor(s): Yongxi Song, Jun Wang, Jingxu Sun, Xiaowan Chen, Jinxin Shi, Zhonghua Wu, Dehao Yu, Fei Zhang, Zhenning Wang (Source: Genomics, Proteomics and Bioinformatics)
Source: Genomics, Proteomics and Bioinformatics - February 18, 2021 Category: Bioinformatics Source Type: research

Increased Expression of Colonic Mucosal Melatonin in Patients with Irritable Bowel Syndrome Correlated with Gut Dysbiosis
Publication date: Available online 17 February 2021Source: Genomics, Proteomics & BioinformaticsAuthor(s): Ben Wang, Shiwei Zhu, Zuojing Liu, Hui Wei, Lu Zhang, Meibo He, Fei Pei, Jindong Zhang, Qinghua Sun, Liping Duan (Source: Genomics, Proteomics and Bioinformatics)
Source: Genomics, Proteomics and Bioinformatics - February 18, 2021 Category: Bioinformatics Source Type: research

Classification of the Gut Microbiota of Patients in Intensive Care Units During Development of Sepsis and Septic Shock
Publication date: Available online 17 February 2021Source: Genomics, Proteomics & BioinformaticsAuthor(s): Wanglin Liu, Mingyue Cheng, Jinman Li, Peng Zhang, Hang Fan, Qinghe Hu, Maozhen Han, Longxiang Su, Huaiwu He, Yigang Tong, Kang Ning, Yun Long (Source: Genomics, Proteomics and Bioinformatics)
Source: Genomics, Proteomics and Bioinformatics - February 18, 2021 Category: Bioinformatics Source Type: research

Elucidation of the microRNA Transcriptome in Western Corn Rootworm Reveals Its Dynamic and Evolutionary Complexity
Publication date: Available online 17 February 2021Source: Genomics, Proteomics & BioinformaticsAuthor(s): Xiaozeng Yang, Elane Fishilevich, Marcelo A. German, Premchand Gandra, Robert E. McEwan, André Billion, Eileen Knorr, Andreas Vilcinskas, Kenneth E. Narva (Source: Genomics, Proteomics and Bioinformatics)
Source: Genomics, Proteomics and Bioinformatics - February 18, 2021 Category: Bioinformatics Source Type: research

kLDM: Inferring Multiple Metagenomic Association Networks based on the Variation of Environmental Factors
Publication date: Available online 17 February 2021Source: Genomics, Proteomics & BioinformaticsAuthor(s): Yuqing Yang, Xin Wang, Kaikun Xie, Congmin Zhu, Ning Chen, Ting Chen (Source: Genomics, Proteomics and Bioinformatics)
Source: Genomics, Proteomics and Bioinformatics - February 18, 2021 Category: Bioinformatics Source Type: research

OGP: A Repository of Experimentally Characterized O-Glycoproteins to Facilitate Studies on O-Glycosylation
Publication date: Available online 10 February 2021Source: Genomics, Proteomics & BioinformaticsAuthor(s): Jiangming Huang, Mengxi Wu, Yang Zhang, Siyuan Kong, Mingqi Liu, Biyun Jiang, Pengyuan Yang, Weiqian Cao (Source: Genomics, Proteomics and Bioinformatics)
Source: Genomics, Proteomics and Bioinformatics - February 11, 2021 Category: Bioinformatics Source Type: research

PM2RA: A Framework for Detecting and Quantifying Relationship Alterations in Microbial Community
Publication date: Available online 11 February 2021Source: Genomics, Proteomics & BioinformaticsAuthor(s): Zhi Liu, Kai Mi, Zhenjiang Zech Xu, Qiangkun Zhang, Xingyin Liu (Source: Genomics, Proteomics and Bioinformatics)
Source: Genomics, Proteomics and Bioinformatics - February 11, 2021 Category: Bioinformatics Source Type: research

Compositional Variability and Mutation Spectra of Monophyletic SARS-CoV-2 Clades
Publication date: Available online 11 February 2021Source: Genomics, Proteomics & BioinformaticsAuthor(s): Xufei Teng, Qianpeng Li, Zhao Li, Yuansheng Zhang, Guangyi Niu, Jingfa Xiao, Jun Yu, Zhang Zhang, Shuhui Song (Source: Genomics, Proteomics and Bioinformatics)
Source: Genomics, Proteomics and Bioinformatics - February 11, 2021 Category: Bioinformatics Source Type: research

Profiling Chromatin Accessibility at Single-cell Resolution
Publication date: Available online 11 February 2021Source: Genomics, Proteomics & BioinformaticsAuthor(s): Sarthak Sinha, Ansuman T. Satpathy, Weiqiang Zhou, Hongkai Ji, Jo A. Stratton, Arzina Jaffer, Nizar Bahlis, Sorana Morrissy, Jeff A. Biernaskie (Source: Genomics, Proteomics and Bioinformatics)
Source: Genomics, Proteomics and Bioinformatics - February 11, 2021 Category: Bioinformatics Source Type: research

rePROBE: Workflow for Revised Probe Assignment and Updated Probe-set Annotation in Microarrays
Publication date: Available online 11 February 2021Source: Genomics, Proteomics & BioinformaticsAuthor(s): Frieder Hadlich, Henry Reyer, Michael Oster, Nares Trakooljul, Eduard MurĂ¡ni, Siriluck Ponsuksili, Klaus Wimmers (Source: Genomics, Proteomics and Bioinformatics)
Source: Genomics, Proteomics and Bioinformatics - February 11, 2021 Category: Bioinformatics Source Type: research

DeepCAPE: A Deep Convolutional Neural Network for the Accurate Prediction of Enhancers
Publication date: Available online 11 February 2021Source: Genomics, Proteomics & BioinformaticsAuthor(s): Shengquan Chen, Mingxin Gan, Hairong Lv, Rui Jiang (Source: Genomics, Proteomics and Bioinformatics)
Source: Genomics, Proteomics and Bioinformatics - February 11, 2021 Category: Bioinformatics Source Type: research