scLink: Inferring Sparse Gene Co-expression Networks from Single-cell Expression Data
Publication date: Available online 10 July 2021Source: Genomics, Proteomics & BioinformaticsAuthor(s): Wei Vivian Li, Yanzeng Li (Source: Genomics, Proteomics and Bioinformatics)
Source: Genomics, Proteomics and Bioinformatics - July 10, 2021 Category: Bioinformatics Source Type: research

Metagenomic Analysis Reveals A Possible Association Between Respiratory Infection and Periodontitis
Publication date: Available online 9 July 2021Source: Genomics, Proteomics & BioinformaticsAuthor(s): Zhenwei Liu, Tao Zhang, Keke Wu, Zhongshan Li, Xiaomin Chen, Shan Jiang, Lifeng Du, Saisai Lu, Chongxiang Lin, Jinyu Wu, Xiaobing Wang (Source: Genomics, Proteomics and Bioinformatics)
Source: Genomics, Proteomics and Bioinformatics - July 9, 2021 Category: Bioinformatics Source Type: research

Mako: A Graph-based Pattern Growth Approach to Detect Complex Structural Variants
Publication date: Available online 3 July 2021Source: Genomics, Proteomics & BioinformaticsAuthor(s): Jiadong Lin, Xiaofei Yang, Walter Kosters, Tun Xu, Yanyan Jia, Songbo Wang, Qihui Zhu, Mallory Ryan, Li Guo, Chengsheng Zhang, Charles Lee, Scott E. Devine, Evan E. Eichler, Kai Ye, The Human Genome Structural Variation Consortium (Source: Genomics, Proteomics and Bioinformatics)
Source: Genomics, Proteomics and Bioinformatics - July 4, 2021 Category: Bioinformatics Source Type: research

REVA as A Well-curated Database for Human Expression-modulating Variants
Publication date: Available online 3 July 2021Source: Genomics, Proteomics & BioinformaticsAuthor(s): Yu Wang, Fang-Yuan Shi, Yu Liang, Ge Gao (Source: Genomics, Proteomics and Bioinformatics)
Source: Genomics, Proteomics and Bioinformatics - July 4, 2021 Category: Bioinformatics Source Type: research

Precision Methylome and in vivo Methylation Kinetics Characterization of Klebsiella Pneumoniae
Publication date: Available online 29 June 2021Source: Genomics, Proteomics & BioinformaticsAuthor(s): Jing Fu, Ju Zhang, Li Yang, Nan Ding, Liya Yue, Xiangli Zhang, Dandan Lu, Xinmiao Jia, Cuidan Li, Chongye Guo, Zhe Yin, Xiaoyuan Jiang, Yongliang Zhao, Fei Chen, Dongsheng Zhou (Source: Genomics, Proteomics and Bioinformatics)
Source: Genomics, Proteomics and Bioinformatics - June 30, 2021 Category: Bioinformatics Source Type: research

Large-scale Proteomic and Phosphoproteomic Analyses of Maize Seedling Leaves During De-etiolation
Publication date: August 2020Source: Genomics, Proteomics & Bioinformatics, Volume 18, Issue 4Author(s): Zhi-Fang Gao, Zhuo Shen, Qing Chao, Zhen Yan, Xuan-Liang Ge, Tiancong Lu, Haiyan Zheng, Chun-Rong Qian, Bai-Chen Wang (Source: Genomics, Proteomics and Bioinformatics)
Source: Genomics, Proteomics and Bioinformatics - June 26, 2021 Category: Bioinformatics Source Type: research

mrMLM v4.0.2: An R Platform for Multi-locus Genome-wide Association Studies
Publication date: August 2020Source: Genomics, Proteomics & Bioinformatics, Volume 18, Issue 4Author(s): Ya-Wen Zhang, Cox Lwaka Tamba, Yang-Jun Wen, Pei Li, Wen-Long Ren, Yuan-Li Ni, Jun Gao, Yuan-Ming Zhang (Source: Genomics, Proteomics and Bioinformatics)
Source: Genomics, Proteomics and Bioinformatics - June 26, 2021 Category: Bioinformatics Source Type: research

NORMA: The Network Makeup Artist — A Web Tool for Network Annotation Visualization
Publication date: Available online 24 June 2021Source: Genomics, Proteomics & BioinformaticsAuthor(s): Mikaela Koutrouli, Evangelos Karatzas, Katerina Papanikolopoulou, Georgios A. Pavlopoulos (Source: Genomics, Proteomics and Bioinformatics)
Source: Genomics, Proteomics and Bioinformatics - June 25, 2021 Category: Bioinformatics Source Type: research

Genome Warehouse: A Public Repository Housing Genome-scale Data
Publication date: Available online 24 June 2021Source: Genomics, Proteomics & BioinformaticsAuthor(s): Meili Chen, Yingke Ma, Song Wu, Xinchang Zheng, Hongen Kang, Jian Sang, Xingjian Xu, Lili Hao, Zhaohua Li, Zheng Gong, Jingfa Xiao Writing, Zhang Zhang, Wenming Zhao, Yiming Bao (Source: Genomics, Proteomics and Bioinformatics)
Source: Genomics, Proteomics and Bioinformatics - June 25, 2021 Category: Bioinformatics Source Type: research

Life History Recorded in the Vagino-cervical Microbiome Along with Multi-omics
Publication date: Available online 9 June 2021Source: Genomics, Proteomics & BioinformaticsAuthor(s): Zhuye Jie, Chen Chen, Lilan Hao, Fei Li, Liju Song, Xiaowei Zhang, Jie Zhu, Liu Tian, Xin Tong, Kaiye Cai, Zhe Zhang, Yanmei Ju, Xinlei Yu, Ying Li, Hongcheng Zhou, Haorong Lu, Xuemei Qiu, Qiang Li, Yunli Liao, Dongsheng Zhou (Source: Genomics, Proteomics and Bioinformatics)
Source: Genomics, Proteomics and Bioinformatics - June 10, 2021 Category: Bioinformatics Source Type: research

CVTree: A Parallel Alignment-free Phylogeny and Taxonomy Tool based on Composition Vectors of Genomes
Publication date: Available online 10 June 2021Source: Genomics, Proteomics & BioinformaticsAuthor(s): Guanghong Zuo (Source: Genomics, Proteomics and Bioinformatics)
Source: Genomics, Proteomics and Bioinformatics - June 10, 2021 Category: Bioinformatics Source Type: research

Consistent Alterations of Human Fecal Microbes after Transplantation into Germ-free Mice
Publication date: Available online 9 June 2021Source: Genomics, Proteomics & BioinformaticsAuthor(s): Yanze Li, Wenming Cao, Na L. Gao, Xing-Ming Zhao, Wei-Hua Chen (Source: Genomics, Proteomics and Bioinformatics)
Source: Genomics, Proteomics and Bioinformatics - June 9, 2021 Category: Bioinformatics Source Type: research

Glycoproteogenomics: Setting the Course for Next Generation Cancer Neoantigens Discovery for Cancer Vaccines
Publication date: Available online 9 June 2021Source: Genomics, Proteomics & BioinformaticsAuthor(s): José Alexandre Ferreira, Marta Relvas-Santos, Andreia Peixoto, André M.N. Silva, Lúcio Lara Santos (Source: Genomics, Proteomics and Bioinformatics)
Source: Genomics, Proteomics and Bioinformatics - June 9, 2021 Category: Bioinformatics Source Type: research

Integrative Analysis of Genome, 3D Genome, and Transcriptome Alterations of Clinical Lung Cancer Samples
Publication date: Available online 8 June 2021Source: Genomics, Proteomics & BioinformaticsAuthor(s): Tingting Li, Ruifeng Li, Xuan Dong, Lin Shi, Miao Lin, Ting Peng, Pengze Wu, Yuting Liu, Xiaoting Li, Xuheng He, Xu Han, Bin Kang, Yinan Wang, Zhiheng Liu, Qing Chen, Yue Shen, Mingxiang Feng, Xiangdong Wang, Duojiao Wu, Jian Wang (Source: Genomics, Proteomics and Bioinformatics)
Source: Genomics, Proteomics and Bioinformatics - June 9, 2021 Category: Bioinformatics Source Type: research

Single-cell Analysis Technologies for Immuno-oncology Research: from Mechanistic Delineation to Biomarker Discovery
Publication date: Available online 14 May 2021Source: Genomics, Proteomics & BioinformaticsAuthor(s): Zhiliang Bai, Graham Su, Rong Fan (Source: Genomics, Proteomics and Bioinformatics)
Source: Genomics, Proteomics and Bioinformatics - May 15, 2021 Category: Bioinformatics Source Type: research