Genomic marker assisted identification of genetic loci and genes associated with variation of grain zinc concentration in rice.

Genomic marker assisted identification of genetic loci and genes associated with variation of grain zinc concentration in rice.
J Genet. 2019 Dec;98:
Authors: Kumari K, Kumar P, Sharma VK, Singh SK
Abstract
A study was conducted to examine the genetic divergence and to determine the genetic loci and genes associated with natural variation of grain zinc (Zn) concentration among 28 landraces, improved varieties and advanced breeding lines of rice using candidate gene specific primers. Field evaluation of the experimental material was conducted in randomized block design with three replications and Zn content in unpolished grains of the entries was determined by addition of nitric acid and perchloric acid (1:3) following the procedure of diacid digestion method. Statistical analysis revealed the exploitable extent of variability with respect to grain Zn concentration among the entries. Eighteen entries were selected from the two extremes of grain Zn distribution range and subjected to molecular profiling using a panel of 14 candidate genes specific 12 reported and 14 designed primer pairs. Only eight (OsZIP1-1, OsZIP3a, OsZIP4a, OsZIP5-3, OsZIP7-2, OsZIP8b, OsNRAMP7 and OsNAAT1) reported and eight (OsZIP3K, OsZIP4K, OsZIP5K, OsZIP7K, OsNRAMP7K, OsNAAT1K, OsNACK and OsYSL14K) designed primers generated polymorphic amplified products showing sequence length variation due to targeted amplification of candidate genes specific genomic region...

Source: Journal of Genetics - November 30, 2019 Category: Genetics & Stem Cells Authors: Kumari K, Kumar P, Sharma VK, Singh SK Tags: J Genet Source Type: research