GSE125085 Absolute Quantification Method for Microbial Communities Using Microarrays and Competitive PCR

Contributors : Nana Hoashi ; Naoyuki Togawa ; Ayaka YazawaSeries Type : OtherOrganism : Acinetobacter baumannii ; Actinomyces odontolyticus ; Aggregatibacter actinomycetemcomitans ; Bacillus cereus ; Bacteria ; Bacteroides vulgatus ; Bifidobacterium adolescentis ; Campylobacter rectus ; Capnocytophaga gingivalis ; Clostridium beijerinckii ; Cutibacterium acnes ; Deinococcus radiodurans ; Enterococcus faecalis ; Escherichia coli ; Fusobacterium nucleatum ; Fusobacterium nucleatum subsp. nucleatum ; Helicobacter pylori ; Homo sapiens ; Lactobacillus gasseri ; Neisseria meningitidis ; Porphyromonas gingivalis ; Prevotella intermedia ; Prevotella nigrescens ; Pseudomonas aeruginosa ; Rhodobacter sphaeroides ; Staphylococcus aureus ; Staphylococcus epidermidis ; Streptococcus agalactiae ; Streptococcus gordonii ; Streptococcus intermedius ; Streptococcus mutans ; Tannerella forsythia ; Treponema denticolaWe investigated an improved method that combines competitive PCR and microarray techniques. This approach allowed us to quantify specific bacterial groups mounted on DNA chips with accuracy close to that of real-time PCR, despite a measurement at the end point of PCR, and also to estimate the bacterial DNA content in sample DNA.
Source: GEO: Gene Expression Omnibus - Category: Genetics & Stem Cells Tags: Other Acinetobacter baumannii Actinomyces odontolyticus Aggregatibacter actinomycetemcomitans Bacillus cereus Bacteria Bacteroides vulgatus Bifidobacterium adolescentis Campylobacter rectus Capnocytophaga gingivalis Clostridium beijeri Source Type: research