Structural analysis of a phosphonate hydroxylase with an access tunnel at the back of the active site

FrbJ is a member of the Fe2+/α-ketoglutarate-dependent dioxygenase family which hydroxylates the natural product FR-900098 of Streptomyces rubellomurinus, yielding the phosphonate antibiotic FR-33289. Here, the crystal structure of FrbJ, which shows structural homology to taurine dioxygenase (TauD), a key member of the same family, is reported. Unlike other members of the family, FrbJ has an unusual lid structure which consists of two β-strands with a long loop between them. To investigate the role of this lid motif, a molecular-dynamics simulation was performed with the FrbJ structure. The molecular-dynamics simulation analysis implies that the lid-loop region is highly flexible, which is consistent with the fact that FrbJ has a relatively broad spectrum of substrates with different lengths. Interestingly, an access tunnel is found at the back of the active site which connects the putative binding site of α-ketoglutarate to the solvent outside.

Source: Acta Crystallographica Section F - April 21, 2016 Category: Biochemistry Authors: Li, C.Junaid, M.Almuqri, E.A.Hao, S.Zhang, H. Tags: FrbJ hydroxylase crystal structure access tunnel research communications Source Type: research